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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTGTTCATCGCCATAACCTTATTCTGCATTCTCGTTGTTATGCACGCCAATTACGTTCAACAGgtcttcttctcttttattttatttttatttacggcttttccattttaaatacgtccctgctgtttatgcgtaaaactccctggaattagaattgatattt...

Basic information

species Glycine max
transcript GLYMA15G05080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 1
GACGCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTGTTCATCGCCATAACCTTATTCTGCATTCTCGTTGTTATGCACGCCAATTACGTTCAACAGgtcttctt---ctcttttattttattttt--atttacggcttttccattttaaatacgtccctgctgtttatgcgtaaaactccctggaattagaattgatattt
 ||||| |   | |||| |   || ||||||   ||||| ||| | ||||| || || ||||| || ||||||||||||||||||||||| ||||| |||||  | ||   ||||  ||||  ||  ||  |||||  | |  |   |||     |  |  |   |||| |||  |  |           |||    ||| |   
AACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACCTCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGCAGgtaatttttgactctcgtattgaatcctttaatttataggtcgtt--tttagtgcaaattgcctttgttaatgacttcattgttgaaattttaagtctgaga---

upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 1
GACGCCCAAAGTCAGAGTTGCTTTGGAGTATCTCTACCTGTTCATCGCCATAACCTTATTCTGCATTCTCGTTGTTATGCACGCCAATTACGTTCAACAGgtc----------ttcttctcttttattttattt-ttatttacggcttttccattttaaatacgtccctgctgtttatgcgtaaaactccctggaattagaattgatattt
||| |||| |||||||| | || | || ||  | ||||| ||  | ||||| ||  | || || ||||||||||||||||||||||||||||| ||||||||           || || | || || ||||||| ||||||| || ||||    ||  || |  |   || | || |    |||   |   ||  |||   |||       
GACTCCCAGAGTCAGAGCTTCTCTCGAATACATTTACCTCTTTGTGGCCATCACTCTCTTTTGTATTCTCGTTGTTATGCACGCCAATTACGTCCAACAGgtgcttgttggagttttttttttataatttatttgttatttatgggttttg---ttggaaaagtttgttgtttttcaaatttaaggttat-tgcgattgtgatt-------