1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTCTTCGCAATCTCAGAACAGAACACAACAGAGCCCTTCAACTCTCTCTGTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgccccctaccctgcgccctccctcacccgatcaactccctttctctctttccgtcttagcgtggattttccgcacccttttgattgatcttccctttgatgcag
species | Glycine max |
transcript | GLYMA15G04470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG AACTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAAEST: gi|16996926|gb|BM086298.1|BM086298
genomic: GTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAAEST: gi|192331436|gb|FK019909.1|FK019909
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAAEST: gi|5688311|gb|AI941326.1|AI941326
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAAEST: gi|192330035|gb|FK020851.1|FK020851
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAAEST: gi|18732524|gb|BM527091.1|BM527091
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
EST: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAG ATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
genomic: GTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgcccccta ... tttgatgcagATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTCGCAATCTCAGAACAGAACACAACAGAGCCCTTCAACTCTCTCTGTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgccccctaccctgcgccctccctcacccgatcaactccctttctctctttccgtcttagcgtggattttccgcacccttttgattgatcttccctttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA