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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAAATAGATGCTTTGTGCAGTTTTTTTTGAAAGATAATGGCAGACACCGAGGACATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGgtaaaaaaaataaaatacgaggatgattttattatttccaaattttgcttgtagaagtgatttggatagtatgttcttttttgcttggcgtactttgacacatgcatgtgaagggtaccttttgatttgacctaatttactctggattgaaatttgcaatttgcaatgtgtag

Basic information

species Glycine max
transcript GLYMA15G04360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g04570.t01 (Vitis vinifera), 5'ss of exon 2
AGATGAAATAGATGCTTTGTGCAGTTTTTTTTGAAAGATAATGGCAGACACCGAGGACATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGgtaaaaaaaataaaatacgaggatgattttattatttccaaattttgcttgtagaagtgatttggatagtatgttcttttttgcttggcgtactttgacacatgcatgtgaagggtaccttttgatttgacctaatttactctggattgaaatttgcaatttgcaatgtgtag
                               |||   | |||||||||    || || ||||| ||||| |||||||||||||| || |||||||||||||||  |         ||  ||||| ||  | || |||  ||||  |        |||| ||||    | | |   |   |     ||  |   |     | || ||  |||    |  || |||| |||   |   ||  ||||   || |||   |||  |  |        
---------------------------AAACTGATTTAAAATGGCAGA---AGAAGATATTCAGCCACTTGTCTGCGATAATGGTACCGGAATGGTTAAGgtatca---------tatcaggattatcat-ttgtttagaaataataacctgctaagtcatttat-caatcttcacagctaattctgaaggcttgcatgatattcac-tgac--atcactgttgaattgtttt---ttggtctga--tgcaatgc-caacctttag-------