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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTAAGCGGTGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttcacaaaaatttctcatacgctcatatttattatgtgattggatcgtgatcattggcatttgtttatctttttttgtttcag

Basic information

species Glycine max
transcript GLYMA15G04140.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707768|gb|BW683660.1|BW683660
EST:     TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|298175906|gb|HO015311.1|HO015311
EST:     TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACGCGCACACCATCAAGTCATCTTCTGGTCTGCTGGTATCTATG
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|193552697|gb|FK506192.1|FK506192
EST:     TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTCCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|16349341|gb|BI974936.1|BI974936
EST:     TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|120533678|gb|EH261811.1|EH261811
EST:     TGACTCTCGGG-TTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|15664016|gb|BI701387.1|BI701387
EST:     CTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: CTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
EST: gi|213611480|gb|DB972797.1|DB972797
EST:     TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAG                         GCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG
genomic: TGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttc ... tttgtttcagGCACACGCACACCATCAAGTCATCTTCTGGTCTGCTGATATCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGTAAGCGGTGTGGTGACTCTCGGGTTTTACAACGCAGCTTTTCATCGTTCAGTCTAAGgtaacgtttcacaaaaatttctcatacgctcatatttattatgtgattggatcgtgatcattggcatttgtttatctttttttgtttcag

- - - - - - - - - - - - - - - - - -  GCAGCT