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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTGTCTCTGAGAATGGAGGCACTAAGTCGCTCCGTGGAAGAAATATTCGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagcataacgtaactaatgtgcttttcaatttccatgcaccatcaaatcaaataaaaatgcttttcttcgcaaatacctatggctattctttct...

Basic information

species Glycine max
transcript GLYMA15G03160.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193649534|gb|FK598001.1|FK598001
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|298179019|gb|HO024754.1|HO024754
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|298187488|gb|HO034637.1|HO034637
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|193537661|gb|FK497594.1|FK497594
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|298186535|gb|HO037168.1|HO037168
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|298187535|gb|HO034684.1|HO034684
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|193468341|gb|FK434462.1|FK434462
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|151403173|gb|EV272983.1|EV272983
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG
EST: gi|209711281|gb|BW676479.1|BW676479
EST:     CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCG                         ATGTTGAAGATTTCTACAGCCAATGTGATCCTG
genomic: CGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagc ... gctgttgcagATGTTGAAGATTTCTACAGCCAATGTGATCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACTGTCTCTGAGAATGGAGGCACTAAGTCGCTCCGTGGAAGAAATATTCGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGgtaacgtagcataacgtaactaatgtgcttttcaatttccatgcaccatcaaatcaaataaaaatgcttttcttcgcaaatacctatggctattctttct

- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaaa