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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTCGACTGTGACAGTGATAACTGGGTTGTTGACGAGTTGGGTTTCAATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATGgtaagcttttgatttgcttcaaatatatgtttctcattgtcagttgttctatgccctatttttttttcttttcttttcaagaaaacatatttaaagatgt...

Basic information

species Glycine max
transcript GLYMA15G02660.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02660.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G17710.1 (Arabidopsis thaliana), 5'ss of exon 1
CATCGTCGACTGTGACAGTGATAACTGGGTTGTTGACGAGTTGGGTTTCAATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATGgtaagcttt--tgatttgcttcaaatatatgtttctcattgtcagttgttctatgccctatttttttt--tcttttcttttcaagaaaacatatttaaagatgt------------------------
 ||| ||||    ||||| ||||| ||||| || || ||  | ||||||| ||| |||||||| | ||| || || ||||||||||||||| ||||||||||  | |||  | ||     || ||       |||||  | || |||  |||| | | |  ||   ||  ||| |   | |  |  |  ||||     | ||                          
AATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTTGGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGgtttgttttgttcatccatctctaactc----ttctctgtttcggtttctctagggctttgttacgttggtctatatatgttcatcagtcataacactaaatccttatttggttttatttcaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995474|gb|CF807063.1|CF807063
EST:     ATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATG                         GATAAGATGATGATGGAGCTTCATTCCCATGGAAAAACCATTGAGGACATT
genomic: ATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATGgtaagctttt ... gctttaatagGATAAGATGATGATGGAGCTTCATTCCCATGGAAAAACCATTGAGGACATT
EST: gi|13252591|gb|BG363494.1|BG363494
EST:     ATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATG                         GATAAGATGATGATGGAGCTTCATTCCCATGGAAAAACCATTGAGGACATT
genomic: ATGAATTGTTCAATCGGCTCCTTCCCACAATGCCTTGGAACACTCTCATGgtaagctttt ... gctttaatagGATAAGATGATGATGGAGCTTCATTCCCATGGAAAAACCATTGAGGACATT