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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTGTTCGCTCAGACTCTCGCACTTGTTGCAAGGAAGCCCTTGTTTCTCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcccacttctctaacaccatgcctatatcatttaatgtccatttttcttatgtaatgttttttgaaacaagacccttgttttcaaactttttatctcttactaactagtgtttttttttttttttgcatgaagcag

Basic information

species Glycine max
transcript GLYMA15G02350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190751|gb|HO032872.1|HO032872
EST:     TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTT                         TGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
genomic: TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcc ... catgaagcagTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
EST: gi|298176275|gb|HO015680.1|HO015680
EST:     TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTT                         TGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
genomic: TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcc ... catgaagcagTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
EST: gi|208272379|gb|GE067509.1|GE067509
EST:     TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTT                         TGGGGGATTCTAGGGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
genomic: TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcc ... catgaagcagTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
EST: gi|298197415|gb|HO044894.1|HO044894
EST:     TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTT                         TGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
genomic: TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcc ... catgaagcagTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATATATTTGGTGAG
EST: gi|207796849|gb|GD768911.1|GD768911
EST:     TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTT                         TGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATA
genomic: TCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcc ... catgaagcagTGGGGGATTCTAGAGTTTGTTTTTGTTTCTTGCATACATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCTGTTCGCTCAGACTCTCGCACTTGTTGCAAGGAAGCCCTTGTTTCTCACAACTACAAGATGTGGTATTTATCGGATTTAAGCTGCGGTTAGACTTgtaagattcccacttctctaacaccatgcctatatcatttaatgtccatttttcttatgtaatgttttttgaaacaagacccttgttttcaaactttttatctcttactaactagtgtttttttttttttttgcatgaagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC