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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGATAGTCCGTTAGTATGCTCTGCGGTTGTTGAATCTTTTTTAGATTATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaaccctatttcttcttcccttagatttttgtcccttttgcttcctctcatcatagatctgcgtgttctccgtgcattttgctctacaattaagagtt...

Basic information

species Glycine max
transcript GLYMA15G01750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714552|gb|BW662215.1|BW662215
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
EST: gi|209706935|gb|BW661520.1|BW661520
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
EST: gi|193482808|gb|FK446591.1|FK446591
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
EST: gi|213617164|gb|DB963563.1|DB963563
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGACTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
EST: gi|193559981|gb|FK518462.1|FK518462
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA
EST: gi|208123781|gb|GD922401.1|GD922401
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATAGNGCGTGGTTGGATTTG
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAAT-GAGCGTGGTTGGATTTG
EST: gi|193631556|gb|FK583247.1|FK583247
EST:     ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTG                         ATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTGGGATTTGA
genomic: ATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaacccta ... ttcattttagATATTCTTTTTGGCTGAGAGATCAAGCAAAAATGAGCGTGGTTGGATTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCGATAGTCCGTTAGTATGCTCTGCGGTTGTTGAATCTTTTTTAGATTATTCCTGAACCCTTCAAAACCCTCTTATCTCTCTTCTATCGCTTGGCCTGgtaaaccctatttcttcttcccttagatttttgtcccttttgcttcctctcatcatagatctgcgtgttctccgtgcattttgctctacaattaagagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc