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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgtattcactattcttcaccgcagcacttcctaacctaatttctcaattcacaatttgctctctctcgcag

Basic information

species Glycine max
transcript GLYMA14G40270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 1
-------ATGCTAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgta---ttcactat-tcttcaccgcagcacttcctaacctaatttctcaattcacaatttgctctctctcgcag-----------
        |||  |     ||   ||| ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| ||||| || |||     | | |   | |  |  |  |  |   | ||             | |  || ||| |      |||            
CAGGATGCTGCCGGATGGCGGCGCCGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAGAACGCCTTCTACATGCACCGCGCCCTCgtaaggcccgccaaaccctagctccctcggtctgtgactgccccctctcgcttatcatctgccccgatcggcaattcgtgcgcag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 1
----ATGCTAGC--ACAG-GGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgtattcactatt------cttcaccgcagcacttcctaacctaatttctcaattcacaatttgctctc---tctcgcag-----------
    |||||  |  || | ||    || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| ||||| || |||    ||  |      ||  ||| |  ||| |||  |||   ||  ||  | | |  |  |   ||   ||  ||             
GCGGATGCTCCCCGACGGCGGCGCTGACGACGAGGAGCGGTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCCTTCTACATGCACCGCGCCCTCgtaagtcctcctgcggaactctacccc--cacctccccacc-gcttcttccttcctcggtccgtgttccaatcgtgcgatttgggtgcag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 1
----ATGCTAGC--ACAGGGATTC-GAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgtattcactattcttcaccgcagcacttcctaac--ctaatttct--caattcacaatttgctctctctcgcag-------------------
     ||||  |  || | | | | || ||||| |||   |||||||||||||| ||||||||| | ||||| ||||| |||| |||||| || || || |||  | |  | |   ||   | | |  |||  |  |    | |      |||     | | ||  | |  ||                    
ACGGGTGCTCCCCGACGGCGGTGCTGACGACGAGGAGCGCTGGCTCGCCGAGGGCATCGCCGGCGTCCAGCAAAACGCTTTCTACATGCACCGTGCCCTCgtaagccccctgcggaactatacccccacctgcctaccggctaccgctgcttccttcctcggtccgtgttccaatcatgcaatttgggcgcag

upper sequence: GLYMA14G40270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 1
----ATGCTAGCACAGG---GATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgt--attcactattcttcaccgcagcacttcctaacctaatttctcaattcacaatttgctctctctcgcag--------
    |||  | | |  |   || | || ||||| || || ||||| || || || |||||||| || ||||||||||| |||||||||||||||||  ||||   ||  || || ||  || |  |  |   | | || |||| | |  | |  |  |  ||| |||    |        
GAAGATGAGAACGCTCGCCGGAGTAGAAGACGAGGATAAGTGGCTGGCGGAAGGAATCGCCGGAATCCAGCACAACGCTTTCTTCATGCATCGCGCTTTGgtccgtttcctcttattttcctc--cgttgaattagctcatttttgatctgatgaaattttctttctattcgtctctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717785|gb|BW666058.1|BW666058
EST:     AGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTG                         GACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCC
genomic: AGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGgtattcacta ... tctctcgcagGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCC