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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGGATTCACTCCGCAGCTGCAGCACTCAAAACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatctgttcttattctcgcttttcttctttccataaacttcatcatcatcttcttcttcttctcaacgttgaatcttctgctgttgtttgcag

Basic information

species Glycine max
transcript GLYMA14G38950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185816|gb|HO030977.1|HO030977
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATTTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|7145743|gb|AW507665.1|AW507665
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|193356347|gb|FK323060.1|FK323060
EST:     GCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: GCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|193558493|gb|FK515354.1|FK515354
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|20449728|gb|BQ253860.1|BQ253860
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|208238759|gb|GE036319.1|GE036319
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACG-CCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|193644033|gb|FK593796.1|FK593796
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: gi|298193611|gb|HO040259.1|HO040259
EST:     ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG                         ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCGGATTCACTCCGCAGCTGCAGCACTCAAAACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatctgttcttattctcgcttttcttctttccataaacttcatcatcatcttcttcttcttctcaacgttgaatcttctgctgttgtttgcag

- - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA