1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATCGGATTCACTCCGCAGCTGCAGCACTCAAAACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatctgttcttattctcgcttttcttctttccataaacttcatcatcatcttcttcttcttctcaacgttgaatcttctgctgttgtttgcag
species | Glycine max |
transcript | GLYMA14G38950.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATTTCEST: gi|7145743|gb|AW507665.1|AW507665
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCEST: gi|193356347|gb|FK323060.1|FK323060
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: GCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCEST: gi|193558493|gb|FK515354.1|FK515354
genomic: GCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCEST: gi|20449728|gb|BQ253860.1|BQ253860
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCEST: gi|208238759|gb|GE036319.1|GE036319
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACG-CCGCGGCCATGTCEST: gi|193644033|gb|FK593796.1|FK593796
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTCEST: gi|298193611|gb|HO040259.1|HO040259
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
EST: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATG ACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
genomic: ACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatc ... ttgtttgcagACATTCAAGCGCAGGAATGGAGGTCGCAACAAACACGGCCGCGGCCATGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGGATTCACTCCGCAGCTGCAGCACTCAAAACCCTAGAGAGGACGAGAGAGCGTGCAACTTTCGGCAACCACAGACCATGgttcgagatctgttcttattctcgcttttcttctttccataaacttcatcatcatcttcttcttcttctcaacgttgaatcttctgctgttgtttgcag
- - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA