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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgcatttctttttctcctagtttcagttaaggctttacaacttgttttagttgtctgttattctgtatttgagattattcatgttttgcgtgatctt...

Basic information

species Glycine max
transcript GLYMA14G38630.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G38630.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g40200.1 (Oryza sativa), 5'ss of exon 2
CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgc-atttctttttctcctagtttcagttaaggctttaca--acttgttttagttgtctgttattctgtatttgagattattcatgttttgcgtgatctt
| ||||| ||| |   | |||||||| ||||| || |||||||||||||| ||||| |||||||| ||  ||  ||| |  || | | |    ||||||||||||| ||| |||    || |     |  | |  || | |||  || ||||||  ||||     | |   | | | || |  ||     |     |   |  
CAAAATGCTGTTCAATTGCGTGCTTACTATTACTCCAAGGACGAGAAGCTTTTGGTGTATGACTATATGACACCTGGTAGCCTTTGTGCTGCTTTGCATGgtatgctattacttcaaatcattaagcctttcattgcctgacagaacctgttttgtttgtgcaa-agtgaatttattagctggttttaactacatataggc--

upper sequence: GLYMA14G38630.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g08210.t01 (Vitis vinifera), 5'ss of exon 1
CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgcatttctt--tttctcctagtttcagttaaggctttacaacttgttttagttgtctgttattctgtatttgagattattcatgttttgcgtgatctt
|||||||||||||| || |||||||||||||| || ||||| ||||||||| |||||||||||||  || || ||||||   ||||  | || |||||||||||||||||  |  || |   ||  |||    |        |||    |   |     || | | |   |  |   | | | | ||   |    |  |  |
CCAAATGTTGTGCCACTCCGTGCTTATTATTACTCCAAGGATGAGAAGCTCCTGGTTTATGACTATGTCTCAGGTGGCAGCTTATCGGCACTGTTGCATGgtatgcattttctacttccctttaccttctagcataatcagtcaagc-atcaaaaggaactctgaatg-atcatcatggtaactgatagctgtaatacttct

upper sequence: GLYMA14G38630.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S235_117V6.2 (Physcomitrella patens), 5'ss of exon 3
CCAAATGTTGTGCCCCTTCGTGCTTATTATTATTCTAAGGACGAGAAGCTCTTGGTTTATGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGgtatgcatttctttttctcctagtttcagttaaggcttt--acaacttgttttagttgtctgttattc--tgtatttgagattattcatgttttgcgtgatctt---------------
|  ||| | ||||| |||||||||||||| | ||| || ||||||||||||||||| |||||||||||  | |  || | ||| ||  | ||| | ||||||  |   || |    |    |  ||  |  | |  |||   ||   |     ||    ||  || |   || ||||   |  |||  ||   |   | ||||                
CGGAATCTGGTGCCTCTTCGTGCTTATTACTTTTCCAAAGACGAGAAGCTCTTGGTATATGACTACATGTCTATGGGAAGTCTTTCCGCTCTCCTTCATGgtgagttcttttgacacggtgacatttggacatgtatttcggcacactaagcaagacaccttgtaattgatggatttcttaagatttgtgacatagcttatctgctacatgtttcgcag