Sequence
atgc intronic sequence ATGC exonic sequenceTCTCGCTCTCTGCAACGCCGATCGCGTCGTCATGTCGGTGGCCATCGTGCCGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcacaccgactgtttgatgaattgactctgctgaatttctgtttttagctgctgatttgtgagtttaataggcatgcagatttactgtaaaagt...
Basic information
species | Glycine max |
transcript | GLYMA14G36980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G36980.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g63290.1 (Oryza sativa), 5'ss of exon 1
TCTCGCTCTCTGCAACGCCGATCGCGTCGTCATGTCGGTGGCCATCGTGCCGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcacaccgactgtttgatgaattgac-tctgctgaatttctgtttttagctgctgatttgtgagtt-taataggcatgcagatttactgtaaaagt
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TCTCGCGCTCTGCAACGCCGACCGCGTCGTCATGTCCGTCGCCATCGTGCCGCTGTCGCAGGCGTACGGATGGACCCCGTCCTTCGCCGGCGTCGTGCAGgtccctccccagctttagtcaattctgtctacatttgtttggctgcaggtac-agatgcacatacacgggtcgtcataga-atgtgtgctgatgttagaaag
upper sequence: GLYMA14G36980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G856598_T01 (Zea mays), 5'ss of exon 1
TCTCGCTCTCTGCAACGCCGATCGCGTCGTCATGTCGGTGGCCATCGTGCCGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcacaccgactgtttgatgaattgactctgctgaatttctgtttttagctgctgatttgtgagtttaataggcatgcagatttac-tgtaaaagt----
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CCTCGCGCTCTGCAACGCCGACCGCGTCGTCATGTCCGTCGCCATCGTCCCTCTCTCGCAGGCGTACGGGTGGACCCCGTCATTCGCCGGCGTCGTGCAGgttcccagttttctctgactctgtg---cgattttgtttggtttcg--cctgagctagtggctactgagtagtactgactagcccattctcattcaaacgtctgg
upper sequence: GLYMA14G36980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G856598_T02 (Zea mays), 5'ss of exon 1
----TCTCGCTCTCTGCAACGCCGATCGCGTCGTCATGTCGGTGGCCATCGTGCCGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcacaccgactgtttgatgaattgactctgctgaatttctgtttttagctgctgatttgtgagtttaataggcatgcagatttac-tgtaaaagt
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TAGCCCTCGCGCTCTGCAACGCCGACCGCGTCGTCATGTCCGTCGCCATCGTCCCTCTCTCGCAGGCGTACGGGTGGACCCCGTCATTCGCCGGCGTCGTgcaggttcccagttttctctgactctgtg---cgattttgtttggtttcg--cctgagctagtggctactgagtagtactgactagcccattctcattcaaacgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254334412|gb|GR844197.1|GR844197EST: CGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAG TCATCGTTTCTGTGGGGGTATCTGGTTTCCCCTATAGCTGGAGGGGTGTTG
genomic: CGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcac ... ggtattgcagTCATCGTTTCTGTGGGGGTATCTGGTTTCCCCTATAGCTGGAGGGGTGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCGCTCTCTGCAACGCCGATCGCGTCGTCATGTCGGTGGCCATCGTGCCGCTGTCCCTCGCCAACGGGTGGAGCCGAGCCTTCGCCGGAATCGTCCAGgttctcgcacaccgactgtttgatgaattgactctgctgaatttctgtttttagctgctgatttgtgagtttaataggcatgcagatttactgtaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG