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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCCACTACCTTTGTCGCAAATGCGCTTCGCAACATATCGCGGTTCCCATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcag

Basic information

species Glycine max
transcript GLYMA14G24220.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24220.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S140_93V6.1 (Physcomitrella patens), 5'ss of exon 1
GTCATCCACTACCTTTGTCGCAAATGCGCTTCGCAACATATCGCGGTTCCCATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgctaaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcag
||  | || ||||| ||||| ||   ||  || ||     ||||  ||||  | || || |||||||| |||||||||| |||||||||||||||||| ||||       | |  |  | |   | |||    |||||| |    ||    ||  |  |  |  ||  |  | |  |       | |         ||| |   ||  |||                                                       
GTGCTGCATTACCTGTGTCGGAAGGCCGAGTCTCATGTCTTCGCAATTCCTGTCATTGCGGAAATTGACCTGTACAAGTTCGACCCTTGGGACCTTCCTGgta-------tgcctaccttgtccctatt----ttttttgtgaagtcaat-accatcatgagggttagtaatttaattgttcctacagtatggcagtaaattcaaagcataa------------------------------------------------------

upper sequence: GLYMA14G24220.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S5_359V6.1 (Physcomitrella patens), 5'ss of exon 1
GTCATCCACTACCTTTGTCGCAAATGCGCTTCGCAACATATCGCGGTTCCCATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa--tacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgcta---accatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcag
||  | || ||||| ||||| |||  ||  ||  |     ||||| ||||  | || ||||||||||| ||||| |||| |||||||||||||||||| ||||    |||  |  |  ||    |||  |||  | ||  | ||  |      | | ||  | | |      |      |   | ||  | || || | |                                                                       
GTTCTTCATTACCTGTGTCGGAAAGCCGAGTCTAAGGTGTTCGCGATTCCTGTTATTGCCGAAATTGACCTGTATAAGTTCGACCCTTGGGACCTTCCTGgta-tgataacctttattaactttatcttttaattgttactttcatcatgagcattattaattgctgcatagccacaacagggagcagtaaattcaacgtg----------------------------------------------------------------------

upper sequence: GLYMA14G24220.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S259_67V6.1 (Physcomitrella patens), 5'ss of exon 1
GTCATCCACTACCTTTGTCGCAAATGCGCTTCGCAACATATCGCGGTTCCCATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaatacacaaatcgaatccattatctttttttctctcctctgcgactttttttcgttttccttctctgc---taaccatcagatccaccttataattctgaaatatataatatttttttattaataaataattttattttcttttggtgtcgtgttatgcag
||  | || || ||||| || ||    |  ||  |     || |  | ||  | ||| ||||  ||||||| ||||| | |||||||||||||||||||||| |       || | ||||    | || ||  |     ||  |  |  |     |  ||  ||||  || || |    |||   |||       |||| |                                                                    
GTGCTGCATTATCTTTGGCGGAAGGCAGAATCAGAGATGTTCTCCATCCCTGTTATCACCGAGCTTGATCTCTACAAATTCGACCCTTGGGACCTTCCAGgtgagctcctaactcgaatccggac-atcattctgcaaactaacagcgcccgtaatcattgattttatttttcagtacgtaaatttcaatcaagtcttaca--------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575399|gb|CX548374.1|CX548374
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACTTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11413801|gb|BF425812.1|BF425812
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTT-CACGCCGAGGGAC
EST: gi|254319629|gb|GR830761.1|GR830761
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|20811782|gb|BQ296260.1|BQ296260
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11274388|gb|BF324741.1|BF324741
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTNGGGACCTTNCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|15664353|gb|BI701724.1|BI701724
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|11413028|gb|BF425048.1|BF425048
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|120534378|gb|EH262511.1|EH262511
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTA-TTTTTTCACGCCGAGGGAC
EST: gi|120534166|gb|EH262299.1|EH262299
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTANNNNNNNCACGCCGAGGGAC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTA-TTTTTTCACGCCGAGGGAC
EST: gi|254322249|gb|GR837663.1|GR837663
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213617798|gb|DB959382.1|DB959382
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|298163534|gb|HO012267.1|HO012267
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254320223|gb|GR829411.1|GR829411
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213620404|gb|DB957301.1|DB957301
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254314647|gb|GR829640.1|GR829640
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213607698|gb|DB958717.1|DB958717
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|16106046|gb|BI893786.1|BI893786
EST:     ATAATCGCCGAATTTGTATTTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTCTGCACGGACAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: ATAATCGCCGAAATTG-ATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|10847622|gb|BF071581.1|BF071581
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|213599829|gb|DB973887.1|DB973887
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|254343687|gb|GR857443.1|GR857443
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
EST: gi|10847892|gb|BF071632.1|BF071632
EST:     CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAG                         GAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC
genomic: CATAATCGCCGAAATTGATCTGTACAAGTACGACCCTTGGGACCTTCCAGgtaacagtaa ... tgttatgcagGAATGGCTTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGACC