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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag

Basic information

species Glycine max
transcript GLYMA14G23990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 1
--AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataaca-acaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
  |  |  | | | ||  | |   ||    |   |||||| ||||| || ||||| |||||||||||||||||||| |||||  | |||||||| |||||||||  ||  |      |  |  || |||| |       |  | | || | |  | | | | ||| || |  |    ||                                                                                                                 
CGACGGCGAGCGACCA--CCATGTCCTCCTCCACCTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTCGGCGCCGCCTCCGCCCTCGTATTCTCCTgtaagctcccaatcttccccttcactttctcggggccagatctgatctgagatgaggttgacacacgacgcatgcaag----------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 1
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
  |        || | | |   |     |   |||||| |||||||| || || || ||||||||||||||||| ||||| || || |||||||||||||||  || || |     ||||| |||  |   ||     | | ||   | |     ||    |||| ||    | | |  | |  || | | |    |   ||   |                                                                                   
CCACCTCCACCTCCACCCATGGCGGCCTCCACCTTCAGCGGCGACGAGACGGCGCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCGCTCGTCTTCTCCTgtaagc-acccatcagatctccctccctcccttctctgtctctt---tcaccagccggatccaaccat----ccattcctcactcccatcacctcggctggtgcctag---------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 5'ss of exon 1
-AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaata--ctactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
 | ||||| |    |  | || |    | | |  ||||| ||||| || || || || ||||||||||||||||| ||||| || |||||||||||||| ||||||   | || || | |   ||| ||||     |  |   | ||   |||      | | | |  ||   |  |    ||||      | | |  |                                                                                             
AACAGGAAGCCGG-AGGCGAAGATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgttcccct-tcgaccatcctccttttccacttgctcgctcatgcgattccgtactcaaagctctagttttttccggataaagtttggatttttcacc------------------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 1
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
                     |    | | |  ||||| ||||| || || || || |||||||| |||||||| ||||| || |||||||||||||| |||||| | | ||  |     |||   ||    |   |     |      |||   |  || |   |   ||| |  |  |  | ||    |  ||| |  |||                                                                                      
---------------------ATGTCGTCGGTGTTCAGCGGCGATGAGACGGCCCCCTTCTTCGGTTTCCTCGGCGCCGCCGCCGCCCTCGTCTTCTCATgttcgtcccgcttccccatactcctcttccactcgca--cgctcgagcgatt---ccgtacccgaagctctagtttttttttttcccgaatagagcttctgtttc------------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 5'ss of exon 1
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgt----tcgccactctctctatctctctctttttgtttataatttt-ttatttaattt--aacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
|  || | || | |     | |    | | |  ||||| ||||| || ||||| ||||||||||||||||| || ||| | || || ||||||||||| |||     |||| |   |||   ||| |   || |  ||    ||   || |||  ||   ||    |      | |    |       || ||   || |                                                                                                
AGCGGCAGCAGTAAGGGGGAGATGTCGTCGGCGTTCAGCGGCGATGAGACCGCCCCTTTCTTCGGCTTCCTTGGCGCCTCCGCTGCGCTCGTCTTCTCATgtacgtgcgccgcctcctcgtcctcacgtgttatactttcggttgcattgtttctttccgaatttgagtggggaaaaggttggagccgatcccgtccttt------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 5'ss of exon 1
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgc-cactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtgagttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
      ||    |  | |  || |||| |   |||||| ||||||||||||||||| |||||||||||||| || |||||||| ||||| || ||||| |||     |  | | ||| |||   ||||||| |||     ||  |  || ||||     | ||       ||  |  |   | |   ||    |  |  |||||||                                                                                    
CTTCCGATATCCCTGTAATCAAACATGTCTACCTTCAGCGGCGACGAAACCGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaataccttttttctctctgattctttttattttggtcttcatgctttatttcctttttacc------ctgtttgtttcactggaaaatgttgtcccgagttat------------------------------------------------------------------------------------

upper sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 5'ss of exon 1
AAAGGAATCAATCAATCAAAAACCATGGCAGGCTTCAGTGGCGACGAAACCGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgataacaacaatactactaataataataccaagctctagcgtga-gttattgaaaactttctgttatctgtctttgttacggattaaaaaaatatgatttattccgtggcctttatttttattatgattggtag
|   ||  |            |||  ||| |  |||| ||| || ||   ||||||||||||||||||| |||| ||||| || |||||||||||||| ||| ||| |    | |     | ||  | | ||||| |||       |  ||||   |||        |  || ||  |   ||     |    || |  | ||  ||||                                                                                 
ATTCGATCCGGCGCCATGTCGACCTCGGCGGTGTTCAATGGGGATGAGGTCGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatgtccgc-----ccctgatgtagtttagaatcg---ggtctatttggtgatgggtttcgtggtattag-atggatttttggaaggagtgctacgtccttga---------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843363|gb|BF066665.1|BF066665
EST:     CGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCT                         GTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGA
genomic: CGCTCCTTTCTTCGGCTTCCTCGGTGCCGCTGCGGCCCTCGTCTTCTCCTgttcgccact ... tgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGA