Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaaggcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag

Basic information

species Glycine max
transcript GLYMA14G21360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21360.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g22650.1 (Oryza sativa), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaaggcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag
||  | ||||||||||||||||| ||  | ||||| || |||||  ||||||||||||| |||||||| ||||||||||||||   |||||        ||| |||  |||   |    |  |    || |   | |  | ||  |     |  | |  ||   |   |    |  |||   | |    |  || |                                               
GGTCTAAGACAGGAGGTTATTGTGGACCTTGTGGATCAATGTCGTTCTTACAAGCAGAGGGTGGTACAGCTTGTCAACTCAACCACgtaagt-------tccttttttatgtctttgcct--ttccaaccgt-catatgaattgcagggaatcaggtagtgggaaacatgacatacatatt-tctgacttccttgtt----------------------------------------------

upper sequence: GLYMA14G21360.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g12880.1 (Oryza sativa), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaaggcctggaatccctttccatgatataatataatgatgactgcgtaca-atatttttaactgcttggttcatgttcattg--tatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag
||  | || |||||||| ||||| ||  | || || |||||||| ||||||||||||||||||||||  || || ||  | ||   || ||      ||  |   |   || |  |||||| |  | ||| |  | | ||   |  |  ||  ||  | |  ||| |||   |   |  || |   | ||                                                        
GGACTAAGGCAGGAGGTAATTGTGGAGCTTGTTGATCAGTGTCGCACTTACAAGCAGAGAGTGGTACTACTAGTTAATGCTACCGCgtgagt-----aaatctaatatttggtg-aatatagtttttacttctaagatatggatgaagttgactgactgaacttccttgacaaccctggattatgggcatgt------------------------------------------------------

upper sequence: GLYMA14G21360.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G32760.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaag-gcctggaatccctttccatgatataatataatgatgactgcgtacaatatttttaactgcttggttcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag
|   | | ||| |||||||| || ||| |||||||||||||||| || ||||| || |||||||| ||||| |||||||| |||| ||||| ||     ||     ||   | |   || | || ||  ||       || | |         |   | || ||  |||   |    | |  || | || |||||||                                               
GATCTCAAACAAGAGGTTATGGTCGATCTGGTGGAGCAGTGTCGTACATACAAACAAAGAGTGGTGCACCTCGTCAACTCGACTTCgtaagagctctttattttcctcttcggttccatttgattatctcttt----catgtctc-----atataagttatatttcttggggtac-gagacgattt-ttttttttat-----------------------------------------------

upper sequence: GLYMA14G21360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 5'ss of exon 7
GGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTACACCTTGTCAACTCAACTTTgtaaggcctggaatccctttccatgatataatataatgatgactgcgta--caatatttttaactgcttggt-tcatgttcattgtatttttaataaaatgtattctttttatccaaacaatataacagttattattatggtcttttctgtctattctag
||| | || |||||||||||  | || ||||| || |||||||| || |||||||| |||||||| ||||||||||||||||||  || ||||||   |   |||| | || || | |    || | |||  |||  || | |     |   ||| |  | || |||||  |  |  ||   | |                                                             
GGGCTCAGGCAGGAGGTTATCATGGACTTGGTAGATCAGTGTCGGACATACAAGCAAAGAGTGGTCCACCTTGTCAACTCAACTGCgtgaggcctcatacttcttttcttgttaca-tgctttgttaactttgtaatcattgtaccatatcactttgcattattttcatgcttctgctacctagaca-----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208113046|gb|GD912435.1|GD912435
EST:     CTTGTCAACTCAACTTT                         GGATGAATCACCGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCG
genomic: CTTGTCAACTCAACTTTgtaaggcctg ... tctattctagGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCG