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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGTTGCTGCAATCCCTGGAACCTTTTTTTGTGCGTGGTATGCCTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCTTTCTGTATACAGgtttggtgcttaactttttacctgtgtatatttgtttgaattctactttcctggtctaaaaggatgcctttatggaactaatgtggttagtattctttgg...

Basic information

species Glycine max
transcript GLYMA14G21190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G21190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 6
GATCGTTGCTGCAATCCCTGGAACCTTTTTTTGTGCGTGGTATGCCTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCTTTCTGTATACAGgtttggtgcttaactttttacctgtgtatatttgtttgaattctactttcctggtctaaaaggatgcctttatggaactaatgtggttagtattctttgg--
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GATCGTTGCAGCAATACCAGGGACCTTTTTCTGTGCATGGTATGCTTCCCAGAAGCATTGGCTAGCCAACAATATATTGGGCCTCGCTTTCTGCATTCAGgtttggcagctgtatttcatcagaaccattgttacattggatgt-ctccatttgctagcatgaacctattcatattagttttg-ggttacttatttttacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334327|gb|FK025532.1|FK025532
EST:     CTTGCTTTCTGTATACAG                         GGGATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
genomic: CTTGCTTTCTGTATACAGgtttggtgct ... atattcacagGGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
EST: gi|208136700|gb|GD939674.1|GD939674
EST:     CTAGCAAATAATATATTGGGTCTTGCTTTCTGTATACAG                         GGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG
genomic: CTAGCAAATAATATATTGGGTCTTGCTTTCTGTATACAGgtttggtgct ... atattcacagGGAATTGAAATGCTCTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG