Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTCCATAGACGACGCTTTCGGCATCGACGACACCAATCTCTTCCAGAAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttttttctttttcttttaattttatttatttatttcgtttaaataaataaactgattttgtctttggggtag

Basic information

species Glycine max
transcript GLYMA14G20380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G20380.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g04210.t01 (Vitis vinifera), 5'ss of exon 1
GTGTTTCCATAGACGACGCTTTCGGCATCGACGACACCAATCTCTTCCAGAAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgt--------agcacttt-----tttctttttcttttaattttatttatttat--ttcgtttaaataaataaactgattttgtctttggggtag------
| || |||  | ||||||| || |  |||||| ||||||||||||| |||||| | ||||| || |||||||| |||||||||||||||||||||| |||||        | || ||      ||| || || ||| |||| | || ||||    |  |||| | | |    |   | |  |    ||||| |       
GAGTCTCCCAAAACGACGCCTTTGAAATCGACAACACCAATCTCTTTCAGAAATTGGGCCTTCAGACCTTCATCAACCTCTCCACCAATTTCTACACCAGgttctttaccaacaattacacaattttttgttttttaaattgttttaatttgacgtctgtttgattgatgggaggaagtcggaaaatgggggaaaatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176011|gb|HO015416.1|HO015416
EST:     AAACCCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|151411791|gb|EV281602.1|EV281602
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298180166|gb|HO025381.1|HO025381
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192333050|gb|FK024699.1|FK024699
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|193363301|gb|FK326223.1|FK326223
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192310472|gb|FG999187.1|FG999187
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298188951|gb|HO035644.1|HO035644
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|151410942|gb|EV280757.1|EV280757
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|58022773|gb|CX709514.1|CX709514
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|13125116|gb|BG315686.1|BG315686
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|209710293|gb|BW676355.1|BW676355
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|13125139|gb|BG315709.1|BG315709
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192310471|gb|FG999186.1|FG999186
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192317177|gb|FK009778.1|FK009778
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|48575090|gb|CO036229.1|CO036229
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192322320|gb|FK014561.1|FK014561
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298178491|gb|HO024226.1|HO024226
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTTTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|209707693|gb|BW676672.1|BW676672
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|213618183|gb|DB965340.1|DB965340
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298170523|gb|HO019147.1|HO019147
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|38193212|gb|CF922418.1|CF922418
EST:     AAACTCGGCCTCCAAACCCTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAGTATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192303821|gb|FG998173.1|FG998173
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|192332624|gb|FK025729.1|FK025729
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298167358|gb|HO012621.1|HO012621
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|58021991|gb|CX708732.1|CX708732
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298172547|gb|HO019587.1|HO019587
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|151404331|gb|EV274141.1|EV274141
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298191186|gb|HO038665.1|HO038665
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGGTGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
EST: gi|298196640|gb|HO041383.1|HO041383
EST:     AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAG                         GGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA
genomic: AAACTCGGCCTCCAAACCTTCATTAACCTCTCCACCAATTTCTACAACAGgtagcacttt ... tttggggtagGGTTTACGATGACGAGGAAGAATGGTTTCGTTCAATATTCGCGAATTCTGA