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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTGTATGCCACCTACgtacgtctcataccacatgctttcaatcaaccacaaccactaacatcttttgcaccacattctcaactatgtactagtttttttttcttatttatttaat...

Basic information

species Glycine max
transcript GLYMA14G16070.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G16070.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g04240.t01 (Vitis vinifera), 5'ss of exon 2
--------------------------------------------------TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTGTATGCCACCTACgtacgtctcataccacatgctttcaatca-accacaaccactaacatcttttgcaccacattctcaactatgtactagtttttttttcttatttatttaat-
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CGATGGGTCATTCCCAGTGGAGAGGGCGAAGGCAGTGAGTGGAGAGAAGCTTCTGAGGAACATCATGTTGGATAACAAGATAGAGCTCTACGCCCCGTACgtaagttctggcgcattttagtctatttgcactttgtttcctaacgtacgccatac-atgttcaagaa-acggcgtcgtttaaccttaaaatatatgttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31475388|gb|CD417416.1|CD417416
EST:     TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTGTATGCCACCTAC                         GGGAAGCTGATGAACTGCGGGGGAGGTGGTAGCTGCGGAACATGCATAGTA
genomic: TGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTGTATGCCACCTACgtacgtctca ... tcaagaacagGGGAAGCTGATGAACTGCGGGGGAGGTGGTAGCTGCGGAACATGCATAGTA