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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag

Basic information

species Glycine max
transcript GLYMA14G14000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
-CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag
 |    |         ||    ||  ||||  ||   |   ||      | ||||| ||||||||| |||||||| ||||||||||||||||||||||  ||||||       ||     |||    ||  |  ||||||   |  |  ||  ||  | ||| ||||| |   ||    |  | | ||  ||||| |                                             
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCT-CGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgta-----cgcgcgcccg---cgcgctcagatccggggggaatttccgtggagttttctgatt-gtttcgttgattggattttttttttgcag--------------------------------------------

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 1
CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCG---AAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag
|   ||         |    ||     |||  |   |||||   |      ||||||| ||||||||| |||||||| |||| |||||||||||||||||  |||||| |      |      |  ||  ||      |   |     |   || |   || | ||||| |    |  |  || |   |  |                                                    
CCCCGCCCTCCTCCTCTGCTTCC---TCCGCCCTCGCCTCGGGCAGGGTCCCTCTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccccccctgcccgctcagatccctgacactttgatccagcac-ccgatagggagtcgtgatcttattcctggctccgtc-tcag----------------------------------------------------

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 1
CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGA---CCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag
   | ||| |||        || |||     |||||   |||| ||  | ||  |  | ||||| |||||||| |||||||| |||||||||||||| || ||||||       |||||| |||  |||| |  | ||  |   | || | ||    ||  ||      ||  ||   |||| |        || ||   ||  || | ||| || ||||| |||  || || |          
---AACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgcttcgtttttccccattgataatcgaatctcca-atgactctagattagtt-----cttagaattcgatttt--caaatattctg---gtgtcgtaattgaacatttttcttg--tgattag----------

upper sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 1
-CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag
 |  | |  |  |  | |||||| |||||  ||||||| || ||  | |||||| | |||||||||||||||||| |||| ||||||||||||||||| ||||    |    || ||||||     | |   || ||||  ||  | | ||| |  | || | |  ||| |     | || || ||||  |||||   | ||   ||| | | |                            
ACGCATCACGCCGATG-GAGATCCAAGCCTCTTCAGACTTCCAATCCCTCTCTCATCATGGCCTTCTTCTCCTGCCTCGCTTGGCTCTACGTCGCCGGCAGgtttctcc---tcttttctctttccttccgctgaatcc--taatttattcgat-ctcatctcttttttcc-----gtttatgttgttt-ttttgttcgcaa---attggaaggca--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734721|gb|BU765601.1|BU765601
EST:     CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGTCT-TACGTCGCCGGAAG                         GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
genomic: CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaa ... gaattgttagGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
EST: gi|7232441|gb|AW567797.1|AW567797
EST:     CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAG                         GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
genomic: CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaa ... gaattgttagGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
EST: gi|120532999|gb|EH261132.1|EH261132
EST:     CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAG                         GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
genomic: CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaa ... gaattgttagGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
EST: gi|120533853|gb|EH261986.1|EH261986
EST:     CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAG                         GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
genomic: CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaa ... gaattgttagGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
EST: gi|26056275|gb|CA799189.1|CA799189
EST:     CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAG                         GTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA
genomic: CTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaa ... gaattgttagGTTATGGCAAGACGCAGAGAATCGCAATTTACTCGCTAGTCTTCTGAAAAA