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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGATCCCTCGCGTTCTCTGCCCTCCTTCTCTCGCTCTTCGTCCATGGCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctccatcttcatttccatttccatttccatttcacgcgaatgtgttttcttaggttttccgttcctttgaaatttctcgtttatttgctccgtaa...

Basic information

species Glycine max
transcript GLYMA14G11780.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11780.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g06640.t01 (Vitis vinifera), 5'ss of exon 1
TTGGAGATCCCTCGCGTTCTCTGCC-CTCC--TTCTCTCGCTCTTCGTCCATGGCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctccatcttcatttccat--ttccatttc-catttcacgcgaatgtgttttcttaggttttccgttcc-tttgaaatttctcgtttatttgctccgtaa
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---GCGATCTATCGTCTTCCTTGGCACTGCGATTCTTCTCCTTCTGATCCACGCCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccctccctctttccgtgtttccgttttgtgttttttgt---tggatctgtgtgaattttatgttagatctcgcgggttgcgtttggcttctgagaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716722|gb|BW654317.1|BW654317
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCGTTGCAAGTAAAAGTAAACAAATTGACTTCAACAAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgcagGGAGATCCGTTGCAAGTAAAAGTAAACAAATTGACTTCAACAAAGACCCAG
EST: gi|209711818|gb|BW674078.1|BW674078
EST:     GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG                         GGAGATCCGTTGCAAGTAAAAGTAAACAAATTGACTTCAACAAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgcagGGAGATCCGTTGCAAGTAAAAGTAAACAAATTGACTTCAACAAAGACCCAG