1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCAACCGATACGCGCCACGTGTCGGCGACAAACTACCTGAATCGGTTGATTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagcactgtgactctcttaataacttaagtcttcactcttaccgttcctactttacccttctttttatcaatttttttttaaaaaaaagtgaaa...
species | Glycine max |
transcript | GLYMA14G09440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAEST: gi|209709575|gb|BW661902.1|BW661902
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|209729438|gb|BW651818.1|BW651818
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|7925521|gb|AW831547.1|AW831547
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|209728926|gb|BW651716.1|BW651716
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|5606377|gb|AI900531.1|AI900531
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|209699199|gb|BW656188.1|BW656188
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|16996584|gb|BM085956.1|BM085956
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|11413180|gb|BF425191.1|BF425191
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|9258974|gb|BE347121.1|BE347121
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|15285534|gb|BI469425.1|BI469425
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|213599691|gb|DB968397.1|DB968397
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGEST: gi|9440374|gb|BE440880.1|BE440880
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCG
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|15814104|gb|BI786379.1|BI786379
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|213593791|gb|DB957911.1|DB957911
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAEST: gi|213600638|gb|DB968770.1|DB968770
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAA-TAAGAEST: gi|209720674|gb|BW677519.1|BW677519
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|209719075|gb|BW674863.1|BW674863
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGEST: gi|213611001|gb|DB970928.1|DB970928
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTG
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATEST: gi|9986659|gb|BE660767.1|BE660767
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAAT
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|15285045|gb|BI468936.1|BI468936
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAAGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGGATAAAATA-GEST: gi|15814472|gb|BI786747.1|BI786747
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAA-TAAG
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAEST: gi|298184972|gb|HO030185.1|HO030185
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|213596063|gb|DB966310.1|DB966310
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGEST: gi|209707220|gb|BW656838.1|BW656838
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCG
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAGGAEST: gi|11687568|gb|BF595244.1|BF595244
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAAGAGGCTGGG GGAGCTGT-GCGGCATTCTTAGCAATCGGTGCAGCTGAAAGGAEST: gi|120531667|gb|EH259800.1|EH259800
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTG-GGCATTCTCAGCAATCGGTGCAG-TGGAAGGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGAEST: gi|24205301|gb|BU964554.1|BU964554
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
EST: GGAGGAAAGGAAG-TGCTGTTCCTCCAGTNCAA-GAC-AAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCCGTGCAGTGGGAAGAAATAAATAAGEST: gi|209704036|gb|BW673636.1|BW673636
genomic: GGAGGAA-GGAAGGTGCTGTTCCTCCAGT-CAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGG-AAGGAATAAATAAG
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAEST: gi|20449620|gb|BQ253744.1|BQ253744
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAEST: gi|213601375|gb|DB968705.1|DB968705
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCA
EST: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTG GGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
genomic: TTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagc ... tttaatttagGGAGCTGTTGGGCATTCTCAGCAATCGGTGCAGTGGAAGGAATAAATAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAACCGATACGCGCCACGTGTCGGCGACAAACTACCTGAATCGGTTGATTGGAGGAAGGAAGGTGCTGTTCCTCCAGTCAAAGACCAAGGAGGCTGTGgtaagcaagcactgtgactctcttaataacttaagtcttcactcttaccgttcctactttacccttctttttatcaatttttttttaaaaaaaagtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa