Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttcttattgtttattaatgatcattattcatctattttcgtttaacctaatttaattgattaattaattatcattatgccggtctcattgaatgagttgaatttctag

Basic information

species Glycine max
transcript GLYMA14G09100.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G09100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g10520.t01 (Vitis vinifera), 5'ss of exon 1
CGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatt-tcttattgtttattaatgat-cattattcatctattttcgtttaacctaatttaattgattaattaattatcattatgccggtctcattgaatgagttgaatttctag
|||  |  |||||||||||||||  ||||| ||||||||| | || |||||| ||||||| || || || ||||| ||||||||  | || || ||||||||     | |||   | | |     || | | || |  ||  |  |   |||| ||||||   | ||      ||||  |  |  ||||||  || | |                  
CGCCGTGTTGGAGCAGATGAAGCTCCACCTTGCCACCGACGCCGGTAAACAACTCACCAAGAAGATCGGCCTCGTCTATCAGATCAACATCGCCCCTAAGgtccctctctctctctctctccctctgtttccttgtgtatagacgtatttttatcctaatcctaatg------taatacttttgttgccgga-tcgtag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346103|gb|BM890983.1|BM890983
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAC
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG