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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttcttattgtttattaatgatcattattcatctattttcgtttaacctaatttaattgattaattaattatcattatgccggtctcattgaatgagttgaatttctag

Basic information

species Glycine max
transcript GLYMA14G09100.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G09100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g10520.t01 (Vitis vinifera), 5'ss of exon 1
CGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatt-tcttattgtttattaatgat-cattattcatctattttcgtttaacctaatttaattgattaattaattatcattatgccggtctcattgaatgagttgaatttctag
|||  |  |||||||||||||||  ||||| ||||||||| | || |||||| ||||||| || || || ||||| ||||||||  | || || ||||||||     | |||   | | |     || | | || |  ||  |  |   |||| ||||||   | ||      ||||  |  |  ||||||  || | |                  
CGCCGTGTTGGAGCAGATGAAGCTCCACCTTGCCACCGACGCCGGTAAACAACTCACCAAGAAGATCGGCCTCGTCTATCAGATCAACATCGCCCCTAAGgtccctctctctctctctctccctctgtttccttgtgtatagacgtatttttatcctaatcctaatg------taatacttttgttgccgga-tcgtag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180955|gb|HO022394.1|HO022394
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|151408508|gb|EV278316.1|EV278316
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|151398541|gb|EV268412.1|EV268412
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|37995730|gb|CF807319.1|CF807319
EST:     AGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCATTATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AGTCACCAAAAAAATTGGACTCGTTTATCAGATTCA-AATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|21255711|gb|BQ452599.1|BQ452599
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGATAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|21888088|gb|BQ741301.1|BQ741301
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|16349133|gb|BI974728.1|BI974728
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
EST: gi|254348692|gb|GR852371.1|GR852371
EST:     AAGTCACCNNNNNNNTTGGACTCGTTTATCAGATTCAAATTGCTCCTAAG                         AAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG
genomic: AAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGgttagatttc ... gaatttctagAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAG