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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGTGTTTGGTTCCACACAGGCCATTCGTGATTCCTCCATCTCTGTCTTTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACTgtaagaatcacttttttcttgcaaagtcaatgacaaaaattcagtttggaaacttaaaaaaaacatgattttgatcattttatgacag

Basic information

species Glycine max
transcript GLYMA14G08070.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 1
CAGTGTGTTTGGTTCCACACAGGCCATTCGTGATTCCTCCATCTCTGTCTTTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACTgtaagaatcacttttttc---ttgcaaagtcaatgaca-aaaattcagtttggaaacttaaaaaaaacatgattttgatc-attttatgacag---------------------------------------------------------------------------------------------
 ||| || | || ||  | ||||  ||||| ||   |||| |||| ||| | ||||||||||| ||||| || |||||||| |||||||| |||||||||||| |  ||   ||  |    |  |    |  ||  |  | || || |  |   | || ||    ||| || |||   |  || ||   || |                                                                                             
TAGTATGATGGGGTCGTCTCAGGTGATTCGGGACAGCTCCGTCTCCGTCGTCGCTTGTGTTCTCATCGTCGCCTTGGGTCCTATTCAGTTCGGTTTCACTgtatgtttcttcttgcttcattctctcgtttgattgcgtagaaatcggaatatgagct-aatcggaacttgctttcctttgatcttcccactgttttcccggcagccaaacggagcctgttttattgggcttttcttttctactttgtatatctgtttatggattgattttcttgtatcttcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618156|gb|DB965313.1|DB965313
EST:     TTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACT                         GCTGGTTACACCTCACCTACACAATCTGCTATCATCAATGACCTAGGCCTC
genomic: TTGCTTGTGTTCTAATCGTTGCTTTGGGTCCAATTCAGTTTGGTTTCACTgtaagaatca ... tttatgacagGCTGGTTACACCTCACCTACACAATCTGCTATCATCAATGACCTAGGCCTC