1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTTGATCTTGTTCCTGTGGTTAGAGTTTAGAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAGgtaccctttattgtttgaactgtcttcttagtgtttgatgaaatgctgaaccagatttttcag
species | Glycine max |
transcript | GLYMA14G07880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAG GTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGATGACTGGGTTEST: gi|298169292|gb|HO020652.1|HO020652
genomic: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAGgtacccttta ... gatttttcagGTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGCTGACTGGGTT
EST: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAG GTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGCTGACTGGGTTEST: gi|7232565|gb|AW567920.1|AW567920
genomic: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAGgtacccttta ... gatttttcagGTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGCTGACTGGGTT
EST: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAG GTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGCTGACTGGGTT
genomic: GAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAGgtacccttta ... gatttttcagGTGAAACAGATGGCATTGACTTTGAAAGAGGAAGACGCAGCTGACTGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGATCTTGTTCCTGTGGTTAGAGTTTAGAATTTGAAGTAGTAGCTGCATTCCATTTTTCTCCCCTTGGAAGCACGAGgtaccctttattgtttgaactgtcttcttagtgtttgatgaaatgctgaaccagatttttcag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG