Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCGAGTCTGAGATCAAGCAACTTTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctccttgtctcccctcaatttgctcccttttgtgtttagggtttaaaagtacttctgggtgtttcttgtttgttgcaagtt...

Basic information

species Glycine max
transcript GLYMA14G07080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 1
CTCTCCGAGTCTGAGATCAAGCAACTTTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctccttg--tctcccctcaatttgctcccttttgtgtttagggtttaaaagtacttctgggtgtttcttgtttgttgcaagtt-
||||| |||   |||||||||||||| ||||| || ||||| || || ||  || | ||  ||||| | || |||||||||||||| ||||||||||||||||    |||   ||  |||   | |  |||    |    ||  ||  ||| |||  |  ||||| ||  |  || || || |   ||   | |   | ||| 
CTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgt-tttgatttgattcgattcgattctttttttccctttttctttttggtgggtgtggtttcaa--tggttgtgagtttcgattaggtttccgatgttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208267846|gb|GE071221.1|GE071221
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG
EST: gi|192320634|gb|FK012716.1|FK012716
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAATATGGGG