Sequence
atgc intronic sequence ATGC exonic sequenceAGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaattaatctccgtttcacactgatacgctgtttttaagtcgatggttctagaattagggtataaggttagaactgtatgagtaagtgtgtgtgt...
Basic information
species | Glycine max |
transcript | GLYMA14G06870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G06870.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g63160.1 (Oryza sativa), 5'ss of exon 1
AGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaattaatctccgtttcacactgatacgctgtttttaag-tcgatggttctagaattagggtataaggttagaactgtatgagtaagtgtgtgtgt-
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ACGCTGATAGCGCGCGGGATACCCGGGCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAACCAACTCGACCCCCAAGTCAAGCGCAAGCCCTTCACTGgta--caatctgcctttcatccagtagtatctgtatcctataggatacgtgatgttaaccttaatccaaagagtatttgtcttgtctatgaggcaatgctag
upper sequence: GLYMA14G06870.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G169316_T01 (Zea mays), 5'ss of exon 1
AGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaattaatctccgtttcacactgatacgctgtttttaagtcgatggttctagaattagggtataaggttagaactgtatgagtaagtgtgtgtgt----
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ACGCTGATCGCGCGTGGCATCCCGGGCCGCTCCGGCAAGTCCTGCCGCCTGCGCTGGTGCAATCAGCTCGACCCCCAAGTCAAGCGCAAGCCTTTCACTGgtaccgccct---tttcaatctttacttacattgctattttgagcccatgataaatgtatcaaaacctaagcttggcctcacatatgca-gtatctatgtgata
upper sequence: GLYMA14G06870.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g03200.t01 (Vitis vinifera), 5'ss of exon 1
AGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaattaatctccgtttcacactgatacgctgtttttaagtcgatggttctagaattagggtataaggttagaactgtatgagtaagtgt-gtgtgt-
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AGCTTGATCGCCCGTGGAATTTCCGGTCGTTCTGGAAAGTCTTGCCGGCTTCGCTGGTGTAACCAGCTCGACCCTTGCGTCAAGCGGAAGCCCTTTACTGgtaaccg-ccattttcagtcaaattccgtcgttcagttgtta-gttggaatttcgatgagggttttgtatgatgttactttttggagtcgttttagtgttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730415|gb|BM525863.1|BM525863EST: CCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTG AGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAAT
genomic: CCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaatt ... atttctgcagAGGAAGAGGATAGCATCATAGTTTCAGCCCATGCAATCCATGGAAACAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGgtaattaattaatctccgtttcacactgatacgctgtttttaagtcgatggttctagaattagggtataaggttagaactgtatgagtaagtgtgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA