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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag

Basic information

species Glycine max
transcript GLYMA14G06690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01450.2 (Oryza sativa), 5'ss of exon 1
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtc--ctgcacac-tctttcgcctacattcaatttttacactccttacccttatttt-tttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag
||||||||||||||| || || ||||||||| | ||||||||||| |||||| |||||||||| ||||||| ||| || |||| |||||||  |||||||||   ||  | |  ||| ||  || | | |       |   ||    |     ||||  || |||||   ||| |||   ||  ||   ||    ||| |                                                                    
GGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGgtaaactataaatatctctcttctccttccgcccggcatcatcagatctagggttttacttcttcttccattgattccctgaacttgcctttctaatgtt--------------------------------------------------------------------

upper sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g01450.1 (Oryza sativa), 5'ss of exon 1
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgt--cctgcacac-tctttcgcctacattcaatttttacactccttacccttatttt-tttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag
||||||||||||||| || || ||||||||| | ||||||||||| |||||| |||||||||| ||||||| ||| || |||| |||||||  |||||||||   ||  | |  ||| ||  || | | |       |   ||    |     ||||  || |||||   ||| |||   ||  ||   ||    ||| |                                                                    
GGAGCGCGTCATCGGCACCCTCCTCGGCTCCGTCCTCCCCGACGGCACCGTCCATGTCCGCAACTCCTACGTCGTCCCCCACAACGAGTCCCCCGACCAGgtaaactataaatatctctcttctccttccgcccggcatcatcagatctagggttttacttcttcttccattgattccctgaacttgcctttctaatgttaag-----------------------------------------------------------------

upper sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G025214_T04 (Zea mays), 5'ss of exon 6
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcacactctttcgcctacattcaatttttacactc-cttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag
||| ||||||||||| || || ||||| ||| | ||| ||||||| |||||| | |||||||| ||||| | ||| || ||||||||||| | ||||||||||  || ||   |  |  || ||   || |    |  ||  |  |  |   ||  ||  |  ||||| |     | |                                                                                       
GGACCGCGTCATCGGCACCCTCCTCGGTTCCCTCCTCTCCGACGGCACCGTCCACGTCCGCAACTCCTATGTCGTCCCCCACAGCGAGTCAGCCGACCAGgtcg-gctcaga-tcacatctccaacgaactcactcgttcgttcgcattgggttacttgctgatgattggcgctgatgcag------------------------------------------------------------------------------------

upper sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G098153_T01 (Zea mays), 5'ss of exon 1
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcc-tgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgatttgtttctacgattttattttatggatgatgtttacgtgcagaagtccgttatttctgtttttggagtttacttaattttttatttgttttttcacag
 || || |||||||| || || || || ||| | |||||||| || |||||| | |||||||| |||||||  || || ||||||||||| | ||||||||||  | |  |     || || ||   |        |  | | | || | |||   |     | | |   || ||  |||  |      || |||  |                                                                   
AGACCGTGTCATCGGCACCCTCCTTGGATCCCTCCTCCCCGATGGCACCGTCCACGTCCGCAACTCCTACGTGGTCCCCCACAGCGAGTCGGCCGACCAGgtcggttcggatcacgtccccaaccacctcacggatcgattcattccttcattccatcgcattgggtcacttgct--gatgctgggcggtg-atgcag-------------------------------------------------------------------

upper sequence: GLYMA14G06690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G39990.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGCGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCCGACGGAACCGTCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcacactctttcgcctacattcaatttttacactccttacccttatttttttattcttgattt---gtttctacgattttattttatggatgatgtttacgtgcagaagtc-cgttatttctgtttttggagtttacttaattttttatttgttttt----tcacag----------------
 || || ||||||||||| || ||||| || ||  | || ||||||||||||||| |||||||||| |||||||| || ||||  || ||   ||| ||||| |   | | | |     ||| |||     | |       ||  |  |  ||    || || ||| |   ||  ||     |||  ||  | |    ||  |   |  || |||   ||||  |   |      || ||   | | || | ||  |||||     | |  |                
TGAACGAGTCATCGGAACTCTCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTCACAATGAATCATCCGATCAGgttcg--aaattttgatctctaaatttctcctctctctcgattctctatcgttggagatcctagatctttcgtagctgaagatttgcttgttaggatgtgaatgtttataggagtagtgttagcttcataccccaaggttg--tgacttgtgataagttttgagggttatggtttgatatggatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171382|gb|HO016414.1|HO016414
EST:     TCGATGTCCGCAATTCTTACGCCGTTCCGCACAGCGGGTCCGTCGACCAG                         GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: gi|254338950|gb|GR847667.1|GR847667
EST:     TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG                         GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: gi|192324171|gb|FK017902.1|FK017902
EST:     TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG                         GTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG
EST: gi|298171514|gb|HO016546.1|HO016546
EST:     TCGATGTCCGCAATTCTTACGCCGTTCCGCACAGCGAGTCCGTCGACCAG                         GTCGCTTTGGATATTGGGTATCACCATAGTATGTTATTATCCCACCAGAAG
genomic: TCGATGTCCGCAATTCCTACGCCGTTCCGCACAGCGAGTCCGTCGACCAGgtcctgcaca ... tttttcacagGTCGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCCCACCAGAAG