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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCAGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttcactctttctaaatctgttttattagcgagtattaaaaaaatgttttaattactgaattttgagagaatgtgtttttggttgaatcag

Basic information

species Glycine max
transcript GLYMA14G06630.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06630.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S38_196V6.1 (Physcomitrella patens), 5'ss of exon 1
CGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCAGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttcactctttctaaatctgtt-ttattagcgagtattaaaaaaatgttttaattactgaattttgagagaatgtgtttttggttgaatcag-------
 ||||||||||| |||||||||||||||||| | ||  || | || ||||||||||||||||| ||||| |  ||     | ||  ||||   | | || || |||   ||  |  |||    |||   | |||||   | ||   ||  | |||     |  | |  | | | |    | ||| || || | | |        
TGTCCTCATGGGCAAGAACACCATGATGAAGAGGTCCATCCGCATCCACGCTGAGAAAACCGGCAACAAGGATTACGAGGAGCTCCTCCCCGCCTTAGTCgtaagtgaaaccttacctacgcttgtcgctcttagc---tgtttgtaatttctttcctacatcggagct-gggtgtccttatttgtgcttcattgaagttgtta

upper sequence: GLYMA14G06630.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 1
CGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCAGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttcactctttctaaatctgttttattagcgag--tattaaaaaaatgttttaattactgaattttgagagaatgtgtttttggttgaatcag----
 || ||||||||||||||||||||||||||||||||  |  | || || || |||||||| |||||||| |  |||    | ||| ||||   |||||| |||||| |   | |  | |    || |     ||||    || | | |    | | |  ||| ||  ||||| |      || ||||  || | |||     
TGTGCTCATGGGGAAGAACACCATGATGAAGCGCTCCATTCGTATCCATGCCGAGAAAACTGGAAACAAGGATTATGAGGAGCTTCTCCCTGCCCTTGTGgtgagtctt-ttatgaccactcttggtggcacagcgttcttagtgatagttcggtctgcttagtgttttttgggtcctactggttttaatt-actcatggca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135677|gb|BU926187.1|BU926187
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|16346828|gb|BI972423.1|BI972423
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|17401623|gb|BM178405.1|BM178405
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|17153974|gb|BM143907.1|BM143907
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|7685264|gb|AW755912.1|AW755912
EST:     AGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: AGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|16347968|gb|BI973563.1|BI973563
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|254328265|gb|GR835230.1|GR835230
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|254333170|gb|GR850420.1|GR850420
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|33389930|gb|CA853137.1|CA853137
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|193414206|gb|FK380902.1|FK380902
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGGATTGATTTTTCACCAAAGGTGACCTGAAGGAGGTCAGTG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGT-GGGATTGA-TTTTCACCAAAGGTGACCTGAAGGAGGTCAGTG
EST: gi|151409120|gb|EV278928.1|EV278928
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|14126236|gb|BG790674.1|BG790674
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|7590329|gb|AW706084.1|AW706084
EST:     CTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|21677858|gb|BQ630209.1|BQ630209
EST:     GAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: GAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|16104950|gb|BI892690.1|BI892690
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|7235180|gb|AW570509.1|AW570509
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|23733363|gb|BU764877.1|BU764877
EST:     TGAGAAAACCGGAAACAACTTT-TATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: TGAGAAAACCGGAAACAA-TGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|10233610|gb|BE802498.1|BE802498
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|6483223|gb|AW202399.1|AW202399
EST:     CTGAGAAAACCGGAAACAACGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|17152819|gb|BM142752.1|BM142752
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|15287315|gb|BI471206.1|BI471206
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|192330815|gb|FK023044.1|FK023044
EST:     ATCTCAACCTTATCCCGCTCCTTGTT                         GGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG
genomic: ATCTCAACCTTATCCCGCTCCTTGTTgtgagtttca ... gttgaatcagGGCAATGTGGGATTGATTTTCACCAAAGGTGACCTGAAGGAGGTCAGTGAG