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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAACTCATTCTGTTTCTTCAGTTTGGTATAACTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattcttacccttcttctgaatttgatgcattctcaattgtatcttcataataggtttcgatcttcatcttcctttgagcattttactcgaatta...

Basic information

species Glycine max
transcript GLYMA14G06170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601759|gb|BQ612090.1|BQ612090
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|18848488|gb|BM567686.1|BM567686
EST:     GTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|15337125|gb|BI497781.1|BI497781
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6227935|gb|AW156597.1|AW156597
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192299652|gb|FG987755.1|FG987755
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298166678|gb|HO010117.1|HO010117
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|16996475|gb|BM085847.1|BM085847
EST:     ATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: ATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192312625|gb|FK004313.1|FK004313
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|14125494|gb|BG789932.1|BG789932
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209707198|gb|BW656816.1|BW656816
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|151412561|gb|EV282373.1|EV282373
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAGGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209718729|gb|BW671930.1|BW671930
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|151396582|gb|EV266459.1|EV266459
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298186841|gb|HO033940.1|HO033940
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7639605|gb|AW733924.1|AW733924
EST:     TTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: TTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|193519200|gb|FK474965.1|FK474965
EST:     GCCGGGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|14999877|gb|BI320691.1|BI320691
EST:     CACTAGTTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|15201271|gb|BI424783.1|BI424783
EST:     GAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|207806319|gb|GD778796.1|GD778796
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209705389|gb|BW668019.1|BW668019
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|17023171|gb|BM094205.1|BM094205
EST:     GAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213614487|gb|DB972811.1|DB972811
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6566530|gb|AW234173.1|AW234173
EST:     GCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9204413|gb|BE330637.1|BE330637
EST:     GGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213620181|gb|DB967496.1|DB967496
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|38192546|gb|CF921752.1|CF921752
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13791604|gb|BG654195.1|BG654195
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209703748|gb|BW665021.1|BW665021
EST:     AAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: AAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209719323|gb|BW665933.1|BW665933
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192301197|gb|FG988032.1|FG988032
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|254319356|gb|GR828976.1|GR828976
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|15815361|gb|BI787636.1|BI787636
EST:     GCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4314036|gb|AI461155.1|AI461155
EST:     CGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192312626|gb|FK004314.1|FK004314
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|17023146|gb|BM094180.1|BM094180
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|151398495|gb|EV268366.1|EV268366
EST:     AGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTG-AAAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|20813097|gb|BQ297567.1|BQ297567
EST:     GCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|11688388|gb|BF596064.1|BF596064
EST:     GGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7042527|gb|AW472421.1|AW472421
EST:     AGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: AGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213606507|gb|DB958989.1|DB958989
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9205016|gb|BE331240.1|BE331240
EST:     GAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192328145|gb|FK022854.1|FK022854
EST:     CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATG                         GCTAGGGGACTAAAGAAGTATTTGAAAAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattc ... attgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCAACTCATTCTGTTTCTTCAGTTTGGTATAACTTTAGCCGAGGTCAGGAGGAGCACTAGCTAAGTTCACAATTTCAAAATGgttcgtattcttacccttcttctgaatttgatgcattctcaattgtatcttcataataggtttcgatcttcatcttcctttgagcattttactcgaatta

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcttc