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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCCACTACCTCACCAACACCAACCTCTTCCCTAACTTCTTGCTCGACAAGgttcgccttccttcgctctcatcatcatctccatttattttactattccgcaatgctccttttgcagtaaaacttgaattcagttcttgcttctgatttt...

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCCACTACCTCACCAACACCAACCTCTTCCCTAACTTCTTGCTCGACAAGgttcgccttccttcgctctcatcatcatctccatttattttactattccgcaatgctccttttgcagtaaaacttgaattc-agttcttgcttctgatttt-
|||||||||| ||||||| ||| || |||||||||| ||||| ||||||||| |||||||||||||  |  | |||| ||| |||||| | |||||||||||| || | |  ||| |||  | |      | |  |   | |    |  ||  ||       |          | || |   | || | | | |  ||  | 
CATGTGCATCGTCACGCATCTCAGCCACAAGAGCGACTGCCCCTGCTGCGGCAACTACCTCACCAAGGCGCAGCTCTACCCCAACTTCCTCCTCGACAAGgtttgcttgc--tcgttctgcttacacagccgagatggataatggattggccgtggcttccatattccgccgatcgattgggaattttggatgcctatccta

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G104920_T01 (Zea mays), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCCACTACCTCACCAACACCAACCTCTTCCCTAACTTCTTGCTCGACAAGgtt---cgccttccttcgctctcatcatcatctccatttattttactattccgcaatgctccttttgcagtaaaacttgaattcagttcttgcttctgatttt
|||||||||| ||||||||||| ||||||||||||| ||||| |||||||| || ||||| |||||  || | |||| ||| |||||  | || |||||||||    ||||    | | |  |    | |  |  ||  | ||   | |   |   |||  ||         |||||   |||   |   |||   | ||   
CATGTGCATCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTTGACAAGgttagctgcctgttctagttgcctcggttacttttatagaattcg-tgtcatgtgctgcaactgcaaactgcaaactgacatttgctgaatgcaatttatg--

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCCACTACCTCACCAACACCAACCTCTTCCCTAACTTCTTGCTCGACAAGgttcgc--cttccttcgctctcatcatcatctccatttattttactattccgcaatgctccttttgcagtaaaacttgaattcagttcttgcttctgatttt-
||||||| || ||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||  || | |||| ||| |||||  | || ||||||||| ||  | |  |   ||  | ||| |  | |   |    ||  |     |   | |     |   | |     |||        | |   || ||  ||  
CATGTGCGTCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGgttggctgcctattctacttgcctcagctacccttctagaattcatgccatgtgctacaaacctcaaaatggcctttg---ctgaatgtcatttatgtgttgc