1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTAGAATTGGGGTTTCCGTTTCGATTGTACCTACCGGCCAACTTAGGGTGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGgttctctctccccttgcttcaatcattctttctctttttctgtttcactgattgtttatattttatcttatgtgtttttatttttttaaattaaatttcg...
species | Glycine max |
transcript | GLYMA14G05340.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAG GTTCCCTTAGTCAACTTTCGGTTTTT-GATTGTTGAGGATGGTGCTGGTTTEST: gi|193384842|gb|FK353200.1|FK353200
genomic: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGgttctctctc ... gtttctgcagGTTCCCTTAGTCAACTTTCGGTTTTTTGATTGTTGAGGATGGTGCTGGTTT
EST: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAG GTTCCCTTAGTCAACTTEST: gi|209726980|gb|BW680299.1|BW680299
genomic: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGgttctctctc ... gtttctgcagGTTCCCTTAGTCAACTT
EST: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAG GTTCCCTTAGTCAACTTTCGGTTTTTTGATTGTTGAGGATGGTGCTGGTTTEST: gi|208158129|gb|GD952534.1|GD952534
genomic: TGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGgttctctctc ... gtttctgcagGTTCCCTTAGTCAACTTTCGGTTTTTTGATTGTTGAGGATGGTGCTGGTTT
EST: CCTTCTTCTCCTCAG GTTCCCTTAGTCAACTTTCGGTTTTTTGTATTGTTGAGGATGGTGCTGGTT
genomic: CCTTCTTCTCCTCAGgttctctctc ... gtttctgcagGTTCCCTTAGTCAACTTTCGGTTTTTTG-ATTGTTGAGGATGGTGCTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTAGAATTGGGGTTTCCGTTTCGATTGTACCTACCGGCCAACTTAGGGTGCAGTCACTCTCGATCTCACCGATCACCAACGTGCCTTCTTCTCCTCAGgttctctctccccttgcttcaatcattctttctctttttctgtttcactgattgtttatattttatcttatgtgtttttatttttttaaattaaatttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC