1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCCGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGAATTTCTGAGGATATTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGgtccgctttgcttcctagagttttctcgtcggtgcataatatgatccatggttgataattaactctgtgtagtttagactttagacgtttagtaactttgagcttctgttaattttttaattaattaattattttgttaaattgtag
species | Glycine max |
transcript | GLYMA14G03760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAG AGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTEST: gi|209699422|gb|BW664142.1|BW664142
genomic: TTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGgtccgctttg ... taaattgtagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCT
EST: TTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAG AGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCT
genomic: TTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGgtccgctttg ... taaattgtagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGAATTTCTGAGGATATTGTCTCCGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGgtccgctttgcttcctagagttttctcgtcggtgcataatatgatccatggttgataattaactctgtgtagtttagactttagacgtttagtaactttgagcttctgttaattttttaattaattaattattttgttaaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT