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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGGAATCCAGGAAGAAGAAGAAGGGACTGGTGGACGCCATAGGCAACACTCCTTTGATTCGGATCAACAGCCTCTCCGCCGCCACTGGTTGCCAAgtaactatgttctctatgatcacttcacttccattctcttttccaattctactctcaacctatttttatttctcttcag

Basic information

species Glycine max
transcript GLYMA14G01780.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01780.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G165622_T01 (Zea mays), 5'ss of exon 1
GAAGAAGGAATCCAGGAAGAAGAAGAAGGGACTGGTGGACGCCATAGGCAACACTCCTTTGATTCGGATCAACAGCCTCTCCGCCGCCACTGGTTGCCAAgtaactatgt----tctctatgat--cacttcacttccattctcttttccaattctactctcaacctatttttat-ttctcttcag-------------
   ||  |      ||  |     || ||| || ||||| ||||| |||||||| ||| | ||||| |||||||||||||||| ||| || || ||| | ||      ||    |||   ||||    ||   |||  ||  | |     || | |      |    ||| | |   ||||   |              
CGCGAGCGGCCGGCGGGTGCGACGGAGGGGTCTCGTGGAGGCCATCGGCAACACACCTCTCATTCGCATCAACAGCCTCTCCGACGCTACAGGATGCGAGgttcgcgcgtggactcttgctgatgttgctctgcttttatgttttgagtaaagtttggaggtagtgaattgtaacgctctccctatggtatggttgcag

upper sequence: GLYMA14G01780.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0015g00380.t01 (Vitis vinifera), 5'ss of exon 2
GAAGAAGGAATCCAGGAAGAAG--AAGAAG-GGACTGGTGGACGCCATAGGCAACACTCCTTTGATTCGGATCAACAGCCTCTCCGCCGCCACTGGTTGCCAAgtaactatgttctctatgatcacttcacttccattctcttttccaattctac--tctcaacctatttttatttctcttcag----------------------
      |  ||| |  ||||||  |||||| |||||  | || ||||| |||||||| ||||||||||| ||||| |||||||| |  |||||||| ||| | || | | |  ||| ||   |  |||||  |       ||||||  ||| |    |||    || | ||| ||||  ||                         
---ACCGATATCGAAAAAGAAGCCAAGAAGAGGACTTATTGAAGCCATTGGCAACACCCCTTTGATTCGAATCAATAGCCTCTCTGAAGCCACTGGGTGCGAGgtcattttaatcttta---ttgcttcaagttttcatccttttctgattttgtgatctgggtctttgtttgtttccatttttgtgagccgggtctttgtaaatt