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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCGAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtacttttttcacactaagttagaattagttatttttcagtacttgcataaccccttgaaatagtactaattttttgttgttttggtatatgtacag

Basic information

species Glycine max
transcript GLYMA14G01520.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01520.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G26540.1 (Arabidopsis thaliana), 5'ss of exon 1
TTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCG---AGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtacttttttcacactaagt-tagaattagttatttttcagtacttgcataaccccttgaaatagtactaattttttgttgttttggtatatgtacag
 || || ||| ||  ||  |  || |      |      |   |||  |   | ||     |  | ||     | |||||||||||||| ||||||||||||||||   ||   | | ||  | || | |||  ||  |||      |||         ||  | | ||  |  || || | | ||   |           
-TTAGC-TAG-AACCATCTCCGGTTATCCAAATACCGGAATCGATTTAGCGAAACCCACCAATCGGCCTCCGATGGCTGGCTCCTATGGTTACATGGCTCCAGgtaagcttgagaaagtacttgtacacttaactaagtttggagttttga-------ttttgatttgttttgtttgttgggttttacag-----------

upper sequence: GLYMA14G01520.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0015g01120.t01 (Vitis vinifera), 5'ss of exon 2
TTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCGAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtacttttttcacactaagttagaattagttatttt--tcagtact----tgcataacccc-ttgaaatagtactaattttttg--ttgttttggtatatgtacag-------
||||| || || ||  |||  | | | | ||||||  ||  |   ||| |    |  || |||||  ||||||||||||| ||||||||||||||||| |||| || ||  |  | |  |||   ||| | |||||  | | |  |    ||  |||   | ||  | || || | |||||||   |  |||| ||   ||    |       
TTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGgtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600590|gb|BQ610921.1|BQ610921
EST:     GCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAG                         AACATGCATCTATGCAA
genomic: GCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtactttttt ... atatgtacagAACATGCATCTATGCAA
EST: gi|21600666|gb|BQ610997.1|BQ610997
EST:     GCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAG                         AACATGCATCTATGCAACGGATCA
genomic: GCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGgtactttttt ... atatgtacagAACATGCATCTATGCAACGGATCA