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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttctttgctcaacactttatcagatccgcgtttcgcttacgaccacatcaatatcatatttgcttatctgttcctatttctctatttatcttat...

Basic information

species Glycine max
transcript GLYMA14G00760.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349042|gb|BI974637.1|BI974637
EST:     TTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: TTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|7478350|gb|AW666230.1|AW666230
EST:     ACGAGCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|9986217|gb|BE660325.1|BE660325
EST:     GACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: GACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|19269211|gb|BM885467.1|BM885467
EST:     CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|19935544|gb|BQ080482.1|BQ080482
EST:     CCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: CCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|120491397|gb|EH219564.1|EH219564
EST:     CTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: CTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|192312109|gb|FK003872.1|FK003872
EST:     TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|192317815|gb|FK009407.1|FK009407
EST:     TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|192312110|gb|FK003873.1|FK003873
EST:     TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|7233754|gb|AW569097.1|AW569097
EST:     GATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: GATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|192302972|gb|FG996988.1|FG996988
EST:     TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCTTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: TTCGTTTTCGACGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|19345910|gb|BM890790.1|BM890790
EST:     CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTC                         ATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: CGATCCCCTTCTCCTTCTCTCTCTCTTTTTCGCCTCgtaagcttct ... tggattacagATTCCATTTTCATCTATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC