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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatctttactcttgtttatctcatcttttcattcattcattcattcattgtttcatttattcag

Basic information

species Glycine max
transcript GLYMA14G00540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatctttactcttg---tttatctcatcttttcattcattcattcattcattgtttcatttattcag---
||| | || |   | ||||| | ||||||||||||||| ||| |||| ||||| ||||||| |||||| || || || || |||||||| || |||||||||  ||||  | || ||| ||    |    |  ||| || ||||  |   ||||| |   | |  ||||   | || |   ||    |||     ||| |   
AGGATGGCCAACCTCATCGGCTACTGCTGCGACGGCGACGAGCGGCTCCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagttt--cctccctccctccactcccctgcaat-ttaactccgggtctttatattcccctcccatttgatgatcctgccaactattcgacccttctggtc

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatc--tttactcttgtttatctcatctttt---cattcattcattcattcattgtttcatttattcag
 | || || |   ||||||| | ||||||||||||||| ||| | || ||||| ||||||| |||||| || || || || |||||||| || |||||||||| ||||  || |||  |     |  | |     |   |    |  || | |   |   || |     |    |           ||| ||  |    || 
CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgttttcctcctccttaccgatcctctgcccgttggtccgtttctgataaagccgctttctggatttctgcttggctgcgggatgtctcgct-gccca-

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G099598_T01 (Zea mays), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatctttactcttgtttatctcatcttttcattcattcattcattcattgtttcatttattcag-----
 | || || |   | ||||| | |||||||||||| || ||| |||| ||||| ||||||| |||||| || || || || |||||||| || |||||||||  ||||  ||  |  |  |  | |     ||   |  |  |||  |  |  ||   || |  ||   |     ||  ||     |    |||        
CGCCTGGCCAACCTCATCGGCTACTGCTGCGACGGGGACGAGCGGCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtgcgtttg-ctcttgccgatcctctgcccattggcccgt-ttctgataaaagtcgctttctggttgcctgtgagatatatctcgccggccattttcggtaa

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttct-ctctctttttttttttttaatctttactcttgtttatctcatcttttcattcattcattcattcattgtttcatt--tattcag
||  | || |   | |||||||  |||||||||||||| ||  | || ||||| ||||||| |||||| || || || || |||||||| ||||||||||||  |     ||  | ||||    ||  ||   |     |  |  ||| | || |            || ||  |  |    |  | || |   |||| |
AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccctctcgtgctctgcagttcgttgcctgtatgtaccatttgatcatgttccaaagatcggcactcgctgctatgctaatgcagtgcaattctg

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaacttctctctctttttttttttttaatctttactcttg--tttatctcatcttttcattcatt-----cattcattcattgtttcatttattcag---------------------------------------------------------------------------------------
 |  | || | |||||| || |  || || || || |||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| | ||||| |||||| ||   |||||  |||||| ||   | |  |||  |     |   ||   | || ||| |    |||     | | |||| || ||||   |||    |                                                                                       
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctt--tttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag

upper sequence: GLYMA14G00540.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
AGGCTCGCTATTTTGATCGGTTTCTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgttt--------aacttctctctcttttttttt-ttttaatctttactcttgtt-tatctcatcttttcattcattcattcattcattgtttcatttattcag
|| || || | | |||| ||||  ||||| || || ||||||||| | || ||||| ||||||||||| |||||||||||||| |||||| | |||||||||||||||        || ||   | |  | | ||    | |||||  | |  ||||| |   || |  |||  || |||||||    |  |||   |         
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttctggttcttagtttgttttattcatttgacctctgtgctaac-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193536309|gb|FK489605.1|FK489605
EST:     CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACT                         GGGAAACTCAGAACTATTGAGTGG
genomic: CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaa ... atttattcagGGGAAACTCAGA-CTATTGAGTGG
EST: gi|16349103|gb|BI974698.1|BI974698
EST:     CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACT                         GGGAAACTCAGACTATTGAGTGGGCTATGCGGTTGCGAGTCGCTCT
genomic: CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaa ... atttattcagGGGAAACTCAGACTATTGAGTGGGCTATGCGGTTGCGAGTCGCTCT
EST: gi|16349558|gb|BI975153.1|BI975153
EST:     CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACT                         GGGAAACTCAGACTATTGAGTGGGCTATGCGGTTGCGAGTCGCTCTTTACA
genomic: CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaa ... atttattcagGGGAAACTCAGACTATTGAGTGGGCTATGCGGTTGCGAGTCGCTCTTTACA
EST: gi|213606190|gb|DB961334.1|DB961334
EST:     CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACT                         GGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTCGCTCTTTACA
genomic: CGTTGCCGAGTACATGCCTAATGATACTCTTGCCAAGCATCTTTTCCACTgtatgtttaa ... atttattcagGGGAAACTCAGACTATTGAGTGGGCTATGCGGTTGCGAGTCGCTCTTTACA