1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTGTCTTCCATCAGAGTCTTGAAGTCCGGGGGAGCCCCTCTGGGTAAGGAACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactactttattttactcccttattttttaacttctttcttttatttctctagttttaaataactttttttttatttatcatgacaagttctcacgttttaccctcactctactttcaatattttagacattataagtatggaattattaaaagttttaagtttataaataaatacag
species | Glycine max |
transcript | GLYMA13G44950.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|308222709|gb|HO760619.1|HO760619
genomic: ACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGATTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|308098300|gb|HO760041.1|HO760041
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|11688304|gb|BF595980.1|BF595980
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|4291527|gb|AI437632.1|AI437632
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|16348922|gb|BI974517.1|BI974517
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGEST: gi|21888604|gb|BQ741817.1|BQ741817
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAG
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTEST: gi|151407066|gb|EV276881.1|EV276881
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCT
EST: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTTEST: gi|21677924|gb|BQ630275.1|BQ630275
genomic: AACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
EST: AGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAG GGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
genomic: AGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactacttt ... ataaatacagGGATACGGAATGACTGAGGCAGGGCCTGTGCTAACAATGTCTTTAGCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGTCTTCCATCAGAGTCTTGAAGTCCGGGGGAGCCCCTCTGGGTAAGGAACTCGAAGACACTCTCAGAGCTAAATTCCCCAACGCCAAACTTGGCCAGgtactactttattttactcccttattttttaacttctttcttttatttctctagttttaaataactttttttttatttatcatgacaagttctcacgttttaccctcactctactttcaatattttagacattataagtatggaattattaaaagttttaagtttataaataaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT