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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGGAAAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttgacacggtatacttatggtattcttatgataactggcag

Basic information

species Glycine max
transcript GLYMA13G44710.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 3
CAGAGGAAAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttgac----acggtatacttatggta---ttcttatgataactggcag
   |  || || ||||| || |||||  ||||||| |||||||| ||||| || || ||||||||||| ||||| |||||||||||||  |    |||||   ||||||||  |  | |  |   || |   |  |    |  || || |  |   |   || ||    |  || ||||
---AAAAACAGTTGGAAGAACTTATTCTCATACATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaacggattcac--ttttcttcgattctcattgagtatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcag

upper sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 2
CAGAGGAAAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaatctatttgacacggtatacttatggta-ttcttatgataactggcag
   | ||| |||||||| ||||| ||||| ||| | || ||||| ||||||||||| || |||||||| ||||| ||||||||||||  |||| || ||    | || || | |||| |   | ||   |||||| | | |  | |  || |  |||||    |     ||||
---AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaag--cacattactctc--tctttttttttaataatctgtaaag-atttgagatgattcattcttgtttcttcttcctgtgttctgcag

upper sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 3
CAGAGGAAAAGCTGGAAAAATTTATTTGCATACATGGGGCCTGGGTTTCTTGTTTCCATTGCATATATAGATCCAGGAAACTgtaagaacacactattcatgattttcttctgtaatgaaaggaaat-ctatttgacacggtatacttatggtattcttatgataac-tggcag
   ||||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| ||||| |||||||    |   ||| |  ||   || | || |   |  |||| || ||    |   |   || ||     | || ||||  | | ||||
---AGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTgtaagactg-agacttcttagttcctttttttactactataaaatgctcttcctaattatgccctcatctatattttgtgatcgccttgcag