1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGTTGCTTGCTGCTGCTGCATAGTTGATCGAAAGCATGACAACATCATTGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactgaagcaaaccctactctttcatcttctgcaactttgtttgtgttatctatatgtctcaattatataaagttgcatcctttctgctcttaacg...
species | Glycine max |
transcript | GLYMA13G44000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|298174489|gb|HO014634.1|HO014634
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|207683666|gb|GD665529.1|GD665529
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|151403951|gb|EV273761.1|EV273761
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|298182900|gb|HO028113.1|HO028113
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|17153892|gb|BM143825.1|BM143825
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATACTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|192323236|gb|FK017402.1|FK017402
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|192329314|gb|FK020233.1|FK020233
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTCCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|151397263|gb|EV267136.1|EV267136
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|13562443|gb|BG550663.1|BG550663
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTC-TTGTCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|31464055|gb|CD406083.1|CD406083
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|151410513|gb|EV280328.1|EV280328
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|9203815|gb|BE330039.1|BE330039
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|192306124|gb|FG996570.1|FG996570
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATAC--T--TACTGTATCAAATEST: gi|298190798|gb|HO032919.1|HO032919
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|208216921|gb|GE011215.1|GE011215
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: CTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|14012002|gb|BG726924.1|BG726924
genomic: CTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|10232984|gb|BE801872.1|BE801872
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|192306123|gb|FG996569.1|FG996569
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATAC--T--TACTGTATCAAATEST: gi|18039188|gb|BM307482.1|BM307482
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAATEST: gi|17021277|gb|BM092311.1|BM092311
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
EST: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCT CTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
genomic: TGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactga ... gtcttcacagCTAACTAGGTCCTGTTATCATGGAATGAGATACTTTGCTACTGTATCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGCTTGCTGCTGCTGCATAGTTGATCGAAAGCATGACAACATCATTGTCCAGCATCCTTTTCAAGGGAATTGCAGCTCGTTCTTTCACCGCCCCTgtaacactgaagcaaaccctactctttcatcttctgcaactttgtttgtgttatctatatgtctcaattatataaagttgcatcctttctgctcttaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC