Sequence
atgc intronic sequence ATGC exonic sequenceTTATGTTCAGATATTGGGAACTGGGATGGATACTCAAGATACCTCTCCTTCTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAGgtaactctatattcggacattattatctgccttcctatctctctgttgaggattattatttatattcatcttcaattcag
Basic information
species | Glycine max |
transcript | GLYMA13G43270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G43270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G16260.1 (Arabidopsis thaliana), 5'ss of exon 2
TTATGTTCAGATATTGGGAACTGGGATGGATACTCAAGATACCTCTCCTTCTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAGgtaactctatattcggacattattatctgccttcctatctctctgttgaggattattatttatattcatcttcaatt-cag
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----------ATCCTTGGGACTGGAATGGATACACAGGATACGTCACCTTCTGTATTACTCTTCTTTGACAAACAAAGATTCATCTTTAATGCTGGAGAGgtaagtttttctgca-attttattataaag-tgtgtagctttttgttagtgttt--tattggttaaagaattgaattgcag
upper sequence: GLYMA13G43270.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g04000.t01 (Vitis vinifera), 5'ss of exon 2
TTATGTTCAGATATTGGGAACTGGGATGGATACTCAAGATACCTCTCCTTCTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAGgtaactctatatt-----cggacattattatctgccttcctatctctctgttgaggattattatttatattcatcttcaattcag---------------
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----------ATTCTGGGGACTGGGATGGATACACAAGATACTTCGTCTTCTGTCTTGCTTTTCTTTGATAAACAAAGATTTATTTTCAATGCTGGAGAGgtaaacatttggcagcagtgaggaattttatccactgcttaaatttgatgatataattggttaattatgattagaaaagaagaagcaattcacgcaattaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209725282|gb|BW672759.1|BW672759EST: CTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAG GGATTGCAAAGGTTTTGCACTGAGCATAAGATTAAGTTATCAAAG
genomic: CTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAGgtaactctat ... ttcaattcagGGATTGCAAAGGTTTTGCACTGAGCATAAGATTAAGTTATCAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGTTCAGATATTGGGAACTGGGATGGATACTCAAGATACCTCTCCTTCTGTCCTTCTTTTCTTCGACAATCAAAGATTTATATTCAATGCTGGAGAGgtaactctatattcggacattattatctgccttcctatctctctgttgaggattattatttatattcatcttcaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA