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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGTCACCCAAACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCTGGCGAACACTTCATCGGCCGCGTCACCCGCAAAAAAGGCAATTACGCTGAGgtcactcacctcttctcttctcttctcttctcttctcttcacaaacacctttctctttctcatttaattaactaacacacag

Basic information

species Glycine max
transcript GLYMA13G42890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 1
CAAGGTCACCCAAACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCTGGCGAACACTTCATCGGCCGCGTCACCCGCAAAAAAGGCAATTACGCTGAGgtcac-tcacctcttctcttctcttctcttctcttctcttcacaaacacctttctctttctcatttaattaactaacacacag-----------------
||||||  |  | || ||||||||||| ||||||||||| || || || || |||| |||| | ||||||||||| ||||| ||||| || ||||| ||||| |  |    || |   || |    ||     || | |||         | |       |     ||   | |   |   ||                 
CAAGGTGGCTGACACTGGCTTCGTTGTGCTCTGCGACCGTGCACTCCCCGGTGAACGCTTCGTTGGCCGCGTCACTCGCAAGAAAGGGAACTACGCCGAGgttaggtggaatcgttgattgttagttcccagtttgttttctgtttggtttctgagaaaattgcgcaaaggagtggaaagtagcattttgaaatctcgta