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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCTTTTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatcatcgtatctttaaccaagtgagacttattctcaaatgtgtgattaatcgtatgtgaataaagctcattttatgcttgtggggcgtatggtattgatag

Basic information

species Glycine max
transcript GLYMA13G42830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S98_65V6.1 (Physcomitrella patens), 5'ss of exon 2
AACTCCTTTTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgta-ataatcatcgtatctttaaccaagtgagacttattctcaaatgtgtgatta-atcgtatgtgaataaagctcattttatgcttgtggggcgtatggtattgatag
|||   || ||||||||       ||||     |   | || || |||||||||  |||||||||||| || |||||| | ||||| ||||||||||| |||| |   | ||| | ||||||    |  | |   |  ||   |   | |  |   ||| | | | || |  | | |||||  |                         
AACAGGTTCTTGGTGAAGAGAAATGGAAATAATAACAACAGTGTTCAGTTCAGCTCAGAGCCCAACAACCTTTACAACTTGAACACCTTCAAGTACTCAGgtacactcttatcttttctttacgttatagtgtggtgctcgtcaccttctcttcggatcatctctaaa-atggttgattttcag-------------------------

upper sequence: GLYMA13G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ38730 (Selaginella moellendorffii), 5'ss of exon 1
AACTCCTTTTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatcatcgtatctttaaccaagtgagacttattctcaaatgtgtgattaatcgtatgtgaataaagctcattttatgcttgtggggcgtatggtattgatag
|||   || ||||||||   |   || |   |||        ||||| |||||||| |||||||||||||||||||| |||||||| | ||||||||| ||| | ||  |||||   |  | |    | |||   | || | |     | ||      |   || ||  | | |||| | |  ||   |                  
AACAAGTTCTTGGTGAAGCGGAATGGCAACAGCAGCGCCTCGGTGCAATTCAGCAGCGAGCCCAACAATCTCTACAATCTCAACACCTACAAGTACTCAGgtgagaaagatcgt--ttccagctcttttaga---aatcccga-----taatcgtctcttgctggattgatcgcattctctcttttcag------------------

upper sequence: GLYMA13G42830.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ31412 (Selaginella moellendorffii), 5'ss of exon 1
AACTCCTTTTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatcatcgtatctttaaccaagtgagacttattctcaaatgt-gtgattaatcgtatg-tgaataaagctcattttatgcttgtggggcgtatggtattgatag
|||   || ||||||||   |   || |   |||        ||||| |||||||| |||||||||||||||||||| |||||||| | ||||||||| ||| | ||  |||||  ||  | |    | |||  |       ||||  | || |  ||   || || ||  | | |||| | |  ||   |                  
AACAAGTTCTTGGTGAAGCGGAATGGCAACAGCAGCGCCTCGGTGCAATTCAGCAGCGAGCCCAACAATCTCTACAATCTCAACACCTACAAGTACTCAGgtgagaaagatcgt--ctccagctcttttagaaatcccgatgaatgccgcgaatcgtctgttgctggattgatcgcattctctcttttcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252125|gb|BG363028.1|BG363028
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|58014630|gb|CX701372.1|CX701372
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|151412831|gb|EV282643.1|EV282643
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|192334453|gb|FK025574.1|FK025574
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|192298037|gb|FG991317.1|FG991317
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|151404253|gb|EV274063.1|EV274063
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|58023971|gb|CX710712.1|CX710712
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGTCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|209728043|gb|BW666765.1|BW666765
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|151408919|gb|EV278727.1|EV278727
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|209700447|gb|BW664434.1|BW664434
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|193517191|gb|FK473431.1|FK473431
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|120531646|gb|EH259779.1|EH259779
EST:     ACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: ACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|254314518|gb|GR829511.1|GR829511
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|192313717|gb|FK008737.1|FK008737
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|254314519|gb|GR829512.1|GR829512
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|209722539|gb|BW682637.1|BW682637
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|209700448|gb|BW664435.1|BW664435
EST:     ACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: ACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|209702857|gb|BW675727.1|BW675727
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|298181112|gb|HO022551.1|HO022551
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|298168883|gb|HO009813.1|HO009813
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|192295037|gb|FG986756.1|FG986756
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGTGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|16280185|gb|BI943836.1|BI943836
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|192313718|gb|FK008738.1|FK008738
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|151399758|gb|EV269629.1|EV269629
EST:     GCAGAGAGCCCAACAATCTCTATAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: GCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
EST: gi|151411631|gb|EV281442.1|EV281442
EST:     CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCG                         GTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT
genomic: CAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCCGgtaataatca ... gtattgatagGTTTGGCGAACCAGAAAACTGTCACTGTTCAACCTGCTGGTAAAGACCAGT