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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAACACTCGCAATTGGAATCCGAGGCTGATGCCTACAATGTTGATGTCAATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttagatttgtagtgtgtattagtacatgcgttttgaggagaaaggggttttgcaacgttctttttctttgcattgttttgggctccagaatttctcctctgacaattttatttttttgtcttag

Basic information

species Glycine max
transcript GLYMA13G42480.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207760947|gb|GD731988.1|GD731988
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|207780186|gb|GD753115.1|GD753115
EST:     ATGATGAGCACGTAAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: ATGATGAGCACGT-AAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|24136566|gb|BU927076.1|BU927076
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|208311413|gb|GE108621.1|GE108621
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
EST: gi|208145407|gb|GD941842.1|GD941842
EST:     AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGG                         GAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG
genomic: AATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGgttagttaga ... tttgtcttagGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAG