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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTCTTTCTCTTTCTCTGTCTGCTTCTTCACTTTCTCTCGTTTCAATCGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaatcactatcttcaccatttacctttttttttttttgcatgtccggtttttgttttaatctcgatgagtgaaatctcggtagttctactct...

Basic information

species Glycine max
transcript GLYMA13G41120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g62420.2 (Oryza sativa), 5'ss of exon 1
GTTTCTCTTTCTCTTTCTCTGTCTGCTTC-TTCACT-TTCTCTCGTTTCAATCGAA-AAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaatcactatcttcaccatttacctttttttttttttgcatgtccggtttttgttttaatct-cgatgag---tgaaatct-cggtagttctactct--------------
      |         ||||| || ||||  || ||   | ||||| ||        |   ||    | ||| || ||||||||||| |||||||||||||||||| || |    | |     |   | | |  |  |     ||   |     ||||      |  | ||    ||||||   ||   | |   |  |  || | ||              
---CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgatgagtgatgaggcttgggttttatcgatgcgctgcgctgttgctgcgtgcag

upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 5'ss of exon 1
GTTTCTCTTTCTCTTTCTCTGTCTGCTTC-TTCACT-TTCTCTCGTTTCAATCGAAAAAA-ATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaatcactatcttcaccatttacctttttttttttttgcatgtccggtttttgttttaatctcgatgagtgaaatctcggtagttctactct---
      |         ||||| || ||||  || ||   | ||||| ||        |   ||    | ||| || ||||||||||| |||||||||||||||||| || |    | |     |   | | |  |  |     ||   |     ||||      |  | ||   ||    |||    | |||  |     |     
---CTCCACGAAAACCCTCTGCCTCCTTCGCTCGCTGCACCCTCGTCTCGGCGATCCATCCATGGCTGCCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCgtaagtattccccccagcactagtcgtctcacaatccagattccggatgagccggagacgctgctgat---gagtgatgaggcttgggttttatcgatgcgct

upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G146206_T02 (Zea mays), 5'ss of exon 1
-GTTTCTCTTTCTCTTTCTCTGT-CTGCTTCTTCACTTTCTCTCGTTTCAATCGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaat----cactatcttcaccatttacctttttttttttttgcatgtccggtttttgttttaatctcgatgagtgaaatctcggtagttctactct-----------
   | | || ||||   ||||     || ||| |     ||||| |      |||  ||   | |   ||| || |||||||| ||||||||||||||||||||| ||  |  |    | |   || ||      ||| || | |   |||| ||   ||   ||      | | | | |   |||  |||       ||  |||            
AACTCCACTGTCTCCAACTCTCCATCGCGTCTGCTACGCCTCTCCTGCAGGACGACCAATGGCTTC--CAGGAAGTTCTTCGTGGGTGGCAACTGGAAATGCgtaagtccccctaggacccaggctccaggcaccaccgttctctcgatttgaat--tcgacgttacgcagagttttggtt--tgatctctgatggcatccgctcccccgtgtgcag

upper sequence: GLYMA13G41120.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 5'ss of exon 1
GTTTCTCTTTCTCTTT-CTCTGTCTGCTTCTTCACTTTCTCTCGTTTCAATCGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttcaatcactatcttcaccatttacctttt---tttttttttgcatgtccggtttttgttttaatctcgatgagtgaaatctcggtagttctactct-
 ||| ||| ||  |   || ||      |  |  |  | | || |    | ||     ||  ||||| ||||| || ||| |||| ||||||||||||||||||||| ||     ||   |||    ||||| ||     |  | ||  | ||  |   ||||   |||  |  | | ||   |||    || |   | | |   
-TTTATCTGTCGGTGGGCTGTGGACCTGTGGTTTCGGTATTTCATCGTTAGCGGTTTGAAAAATGGGGAGAAAGTTTTTCATCGGCGGCAACTGGAAATGCgtatgtctctgatcctcggttctgt-tttactttcgaagtcatcttccgaattactcattttctgtttggttgccaaga---aaacgatggaaaaacgaatgaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6071447|gb|AW100834.1|AW100834
EST:     GGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: GGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|208185572|gb|GD982085.1|GD982085
EST:     TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|18040397|gb|BM308691.1|BM308691
EST:     CAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|6915528|gb|AW397058.1|AW397058
EST:     TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|192308239|gb|FK002751.1|FK002751
EST:     CGNNNNNNNTCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|15662424|gb|BI699795.1|BI699795
EST:     CGNNNNNNNTCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|7146583|gb|AW508505.1|AW508505
EST:     TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: TCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|192300263|gb|FG987840.1|FG987840
EST:     CGNNNNNNNTCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|37997347|gb|CF808936.1|CF808936
EST:     CGNNNNNNNTCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|9986087|gb|BE660195.1|BE660195
EST:     CGNNNNNNNTCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
EST: gi|151409950|gb|EV279758.1|EV279758
EST:     CGNNNNNNNTCCTGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGC                         AATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT
genomic: CGAAAAAAATCATGGGCAGAAAATTCTTCGTCGGTGGCAACTGGAAATGCgtatgtttca ... tttgttgcagAATGGGACCACTGAGGAGGTGAAGAAGATTGTTACTACTTTAAATGAAGCT