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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTAGTAGCAGAAAGAAAGAGTAACCAGGTGGTAGGGTTTCTAATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaaacttctactacgtcgtgatttccttcaattgcattgcgatttcattcattcatttattttttctattttgttgtgttgaaattcaaaag

Basic information

species Glycine max
transcript GLYMA13G40700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319941|gb|FK013311.1|FK013311
EST:     TTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
genomic: TTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|151409720|gb|EV279528.1|EV279528
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|193579453|gb|FK535396.1|FK535396
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTA
EST: gi|213595278|gb|DB964011.1|DB964011
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCCGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAGGCAGAGCTTCTGA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|298184397|gb|HO029610.1|HO029610
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCCGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAGGCAGAGCTTCTGA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|192319942|gb|FK013312.1|FK013312
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|208245156|gb|GE037014.1|GE037014
EST:     ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
genomic: ATTCTTTTCATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
EST: gi|193591140|gb|FK546917.1|FK546917
EST:     TACTTTTACATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGG                         CGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA
genomic: T-CTTTT-CATCCTCTTCGCAGAGCCTCAGTAGCTTCGCATTAGCAATGGgtatgattaa ... aattcaaaagCGAGAATCAAGGTGTACGAGCTGAGGAACAAGACAAAAGCAGAGCTTCTGA