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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGgtacctaacttctgttccaattttatttatttatttatttatttattgggttggagtgttcctttgtgttgatttcaattgcctgttgcttgtgccttcacag

Basic information

species Glycine max
transcript GLYMA13G39240.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337451|gb|BI498107.1|BI498107
EST:     TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTG                         GACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
genomic: TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGgtacctaact ... gccttcacagGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
EST: gi|8284615|gb|BE022174.1|BE022174
EST:     TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTG                         GACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
genomic: TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGgtacctaact ... gccttcacagGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
EST: gi|192310347|gb|FK002227.1|FK002227
EST:     TCAAGAATCCACACCAACCCCTCACAATTG                         GACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
genomic: TCAAGAATCCACACCAACCCCTCACAATTGgtacctaact ... gccttcacagGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
EST: gi|151394123|gb|EV263994.1|EV263994
EST:     TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTG                         GACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
genomic: TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGgtacctaact ... gccttcacagGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
EST: gi|192310346|gb|FK002226.1|FK002226
EST:     TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTG                         GACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA
genomic: TCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGgtacctaact ... gccttcacagGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGA