1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTTGTTGCTGTAGATGGAGAAGGGTAGAACCGTGGTGGTGTCCGCTCTGCAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaatttcacctcttttccttattttcccactttcaatttcaattcatatcgggttgttcgcccttgcaaccccaattccatgctctcaatcctgaa...
species | Glycine max |
transcript | GLYMA13G39210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|15199519|gb|BI423872.1|BI423872
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|209726298|gb|BW659611.1|BW659611
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|7924791|gb|AW830817.1|AW830817
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|208157579|gb|GD953759.1|GD953759
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGEST: gi|298172516|gb|HO019556.1|HO019556
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|298165233|gb|HO011282.1|HO011282
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGGGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|19935096|gb|BQ080126.1|BQ080126
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAGEST: gi|209726043|gb|BW672766.1|BW672766
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
EST: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAG GCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
genomic: CAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaattt ... tcttgtgcagGCTAGTTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTTATTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTTGCTGTAGATGGAGAAGGGTAGAACCGTGGTGGTGTCCGCTCTGCAGTTTGCTTGCACCGATGATGTCTCAACAAATGTCGCCACCGCCGAGAGgtaacaatttcacctcttttccttattttcccactttcaatttcaattcatatcgggttgttcgcccttgcaaccccaattccatgctctcaatcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacccc