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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttacttctgtttttattttcatcccattctctctcatcgctctcttccgcgattgctttgcag

Basic information

species Glycine max
transcript GLYMA13G39120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g05650.1 (Oryza sativa), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcac----tctctttctatttttcttacttctgtt----tttattttcatcccattctctctcatcgctctcttccgcgat-tgctttgcag---------------
 ||||| || || || ||  ||||||||  ||| || || || |||||||||||||| || |||||| ||||||| ||||||||||||||||  || |||||   |     | |  || | |  ||     || | |    ||  ||     |    |    ||    |||| ||   ||| | || |||                   
CCTCACCGTGCTGCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGCCCACGTCACCCTCTACGACTTCAACATCGACCTCAACCAGTGGgtgagcgatccccccctccactcctcgcggatccgatccggttggttgcttgcttggtgatcctgtgagctcactcatgcgctgtgttttttttccttttttgtttcag

upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g06020.1 (Oryza sativa), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgt--------tcactctctttctatttttcttacttctgtttttattttcatcc--------cattct---------ctctcatcgctctcttccgcgattgctttgcag--------------
 ||||| || || || ||  ||||||||  ||| || || || |||||||||||||| || |||||  ||||||| ||||||||||| ||||  || |||||         ||  | |        |  | | | || | |  | |   | |||        |  |||          | |  |  |||||||||  |  | | ||   |              
CCTCACCGTGCTGCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGCCCACGTCACGCTCTACGACTTCAACATCGAGCTCAACCAGTGGgtgggtgaagccatgcgccgatctgctcgcctccctccgctggtgtccccgtccatatgatccgatctgacgccgtgtttttttttctctcttccttgtctcccttttgggtctatgtgtgcag

upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G131120_T01 (Zea mays), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttacttctgtttt-tattttcatcccat-tctctctcat--------cgctctcttccgcgattgc--tttgcag
 ||||| || ||||| ||  ||||||||  ||| || || || |||||||||||||| || |||||  ||||||| ||||||||||||||||  || |||||   |   |  |       ||||    | | | | |  |  ||||| |  ||  ||| ||         | | |  ||   | ||||  | |||||
CCTCACAGTCCTCCAGCGCCTCGACCCCGCCGTCGAGGACATCCTCATCACCGCCGCGCACGTCACTCTCTACGACTTCAACATCGACCTCAACCAGTGGgtgagccagcggttctcccctcttctgcccgctctgtgatcccatccgacctcgatctaatgcggggtttgtttttctctctgcttgcgctgtgcag

upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G348866_T02 (Zea mays), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgt---tcactctctttctatttttcttacttctgttttt---attttcatcccattc-------tctctcatcgctctcttccgcgattgctttgcag-------
 ||||| || ||||| ||  | ||||||  ||| || || || || ||||||||||| || |||||  ||||||| ||||||||||||||||  || |||||    |||    |  |  ||   |     ||  |||     |     |||| || |       |||| |  ||   |||   | ||||| ||||          
CCTCACGGTGCTCCAGCGCTTGGACCCCGCCGTCGAGGACATCCTTATCACCGCCGCGCACGTCACACTCTACGATTTCAACATCGACCTCAACCAGTGGgtgagccacatattcccccttcccccgcgctccatttaccggaccccgatccgatccggcatgatctcacggcggattctctggtgattggtttgtgctgcgcag

upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G011173_T02 (Zea mays), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttac-ttctgttttt---attttcatcccattc-------tctctcatcgctctcttccgcgattgctttgcag-------
 ||||| || ||||| ||  | |||||   ||| || || || ||||||||||||||||| |||||  | ||||| ||||||||||| ||||  || |||||   |   |  ||       |   |  ||  |||     |   | ||||||| |       |||| |  ||   | |   |   |||  |||          
CCTCACGGTGCTCCAGCGCCTGGACCCAGCCGTCGAGGACATCCTCATCACCGCCGCACACGTCACGCTATACGACTTCAACATCGATCTCAACCAGTGGgtgagccaccgatcccccccacgcgcgctccatttactagaccctgatcccatccggcatgatctcacggcggattatctggttgttggcttgttccgcgcag

upper sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0080g00860.t01 (Vitis vinifera), 5'ss of exon 1
TCTCACTGTTCTCCAACGAATCGACCCCTTCGTTGAAGAAATTCTCATCACCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctctttctatttttcttacttctgtttttattttcatcccattctctctcatcgctctcttccgcgattgctttgcag
|||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| | | |||| ||| | ||     |  || ||||| ||||  |    ||  | |||||   |  |||     |||  ||| |||
TCTCACTGTTCTCCAACGAATCGATCCCTTCGTCGAAGAGATTTTAATCACCGCCGCTCATGTCACCTTCTATGAATTCAACATCGACCTCAGCCAATGGgtactccctctctctctcttctcccccactcttttttttttttt----tttcccctcattatttgcttttc--attcatttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595694|gb|DB962466.1|DB962466
EST:     CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGG                         AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctc ... tgctttgcagAGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: gi|213593287|gb|DB969917.1|DB969917
EST:     CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGG                         AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctc ... tgctttgcagAGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: gi|209709701|gb|BW673969.1|BW673969
EST:     CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGG                         AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctc ... tgctttgcagAGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: gi|151408519|gb|EV278327.1|EV278327
EST:     CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGG                         AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctc ... tgctttgcagAGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
EST: gi|9819945|gb|BE555458.1|BE555458
EST:     CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGG                         AGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG
genomic: CCGCCGCACATGTCACCTTCTACGAGTTCAACATCGACCTCAGTCAATGGgttcactctc ... tgctttgcagAGCCGCAAGGACGTTGAAGGATCTCTCTTCGTTGTCAAGAG