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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGTGCCCTAATTTGGGGGAGTGCTGGTCCGGCGGCGAGACAGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatccaatcatttcgttttatttttatgtatttgtttactttttctaattgtttgagttgtttacactttcacactatggaatgatgagttgagg...

Basic information

species Glycine max
transcript GLYMA13G37570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37570.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g38330.1 (Oryza sativa), 5'ss of exon 1
CGAAGTGCCCTAATTTGGGGGAGTGCTGGTCCGGCGGCGAGACAGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatccaatcatttcgttttatttttatgtatttg-tttactttttctaattgtttgagttgtttacactttcacactatggaatgatgagttgagg
||   ||||| ||  | || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||||| | |    |||| | |  || |   |   || ||| | | ||  |   ||  |  || ||    |||    ||  |||    |   | |  | |   | 
CGCGCTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACCGGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCGGCTGCAGgtaagagattaatcctcttcttgttgctgcttgcattagatgtagctgggctgctgcttagatccttttcggattgtacatggagaccttacta-tcatgt

upper sequence: GLYMA13G37570.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G071714_T01 (Zea mays), 5'ss of exon 1
CGAAGTGCCCTAATTTGGGGGAGTGCTGGTCCGGCGGCGAGACAGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatccaatcatttcgttttatttttatgtatt--tgtttactttttct-aattgtttgagttgtttacactttcacactatggaatgatgagttgagg
|   |||||| ||  | || ||||||||||||||||||||||| ||||| ||||||||||| || ||||| || || ||||| || || || || ||||||| | |      ||||     ||| | |   || | |   ||  ||   | || |  |||||  | |||     ||    |  ||| | |  || | | |   
CCCGGTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACTGGCACCGCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagattcgtcatgctcatttttctgcttgcagtaccgtggacggatgcttagatgtttaggctgtgcggtctgaacctttattgcactat-attcgg--

upper sequence: GLYMA13G37570.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0445g00020.t01 (Vitis vinifera), 5'ss of exon 1
CGAAGTGCCCTAATTTGGGGGAGTGCTGGTCCGGCGGCGAGACAGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatccaatcatttcgttttatttttatgtatttgtttactttttctaattgtttgagttgtttacactttcacactatggaatgatgagttgagg--
|    ||||| ||  |||| |||||||||||||| |||||||| ||||||||||| || || ||||||||  | || ||||| || ||||| || |||||||  |  |  | || ||   ||| ||  || || |||| | ||  |  | |   ||||||| || ||     ||      |  |       ||| ||     
CCCGCTGCCCCAACATGGGCGAGTGCTGGTCCGGTGGCGAGACCGGCACTGCCACTGCGACCATCATGATCTTGGGTGACACCTGCACTCGTGGATGCAGgtagtt-ttgattccttcaatttcatgattttg-atttttgtaggtggttttgatgtttgaatttttgttgtttggttgtttcgttgattcgagatgctccg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706901|gb|BW683215.1|BW683215
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|37995591|gb|CF807180.1|CF807180
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|33390566|gb|CA853761.1|CA853761
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|7691879|gb|AW759997.1|AW759997
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTGTGTAATGTTAAGACATCCAGGACTCCTGCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|120530144|gb|EH258278.1|EH258278
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|120530253|gb|EH258387.1|EH258387
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|37996896|gb|CF808485.1|CF808485
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|120530165|gb|EH258299.1|EH258299
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|213597244|gb|DB964373.1|DB964373
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACGTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACATCCAGGACTCCTCCACCACCTGACCCTGATGA